Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | SPEN|TNFRSF1B | SPEN | TNFRSF1B | 1 | 1 | 1 | 1 | 23 | 12 | 12 | 0.13 | 16242774 | 12262024 | tier1 | In-frame | 16719 | NA | 0 |
| PRAD | TCGA-J4-A67T-01A | TCGA-J4-A67T | SSFA2|PTPN4 | SSFA2 | PTPN4 | 2 | 2 | 1 | 1 | 2 | 3 | 2 | 0.16 | 182787139 | 120620112 | tier3 | In-frame | 16910 | NA | 0 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | ST14|APLP2 | ST14 | APLP2 | 11 | 11 | 1 | 1 | 11 | 6 | 5 | 0.011 | 130029955 | 129979324 | tier1 | In-frame | 16926 | NA | 0 |
| PRAD | TCGA-2A-A8W1-01A | TCGA-2A-A8W1 | ST7|PTPRZ1 | ST7 | PTPRZ1 | 7 | 7 | 1 | 1 | 23 | 13 | 13 | 2.9 | 116593745 | 121568210 | tier1 | In-frame | 16967 | NA | 0 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | STX3|MS4A15 | STX3 | MS4A15 | 11 | 11 | 1 | 1 | 98 | 89 | 84 | 1.4 | 59523108 | 60535040 | tier1 | CDS-5UTR | 17129 | NA | 0 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | STX6|PRRC2C | STX6 | PRRC2C | 1 | 1 | -1 | 1 | 43 | 44 | 42 | 0.51 | 180971742 | 171560726 | tier1 | In-frame | 17137 | NA | 0 |
| PRAD | TCGA-G9-A9S4-01A | TCGA-G9-A9S4 | SUFU|KCNH2 | SUFU | KCNH2 | 10 | 7 | 1 | -1 | 11 | 17 | 17 | 0.84 | 104309863 | 150672029 | tier1 | In-frame | 17165 | NA | 0 |
| PRAD | TCGA-CH-5791-01A | TCGA-CH-5791 | SVIL|RFC5 | SVIL | RFC5 | 10 | 12 | -1 | 1 | 2 | 1 | 1 | 0.69 | 30024680 | 118456877 | tier2 | 5UTR-CDS | 17219 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | TCF12|DSCAM | TCF12 | DSCAM | 15 | 21 | 1 | -1 | 3 | 6 | 5 | 0.53 | 57384089 | 41741172 | tier4 | In-frame | 17580 | NA | 0 |
| PRAD | TCGA-YL-A8SP-01B | TCGA-YL-A8SP | TCHP|PPTC7 | TCHP | PPTC7 | 12 | 12 | 1 | -1 | 4 | 2 | 1 | 0.22 | 110342598 | 110976078 | tier2 | In-frame | 17610 | NA | 0 |
| PRAD | TCGA-G9-6351-01A | TCGA-G9-6351 | TCIRG1|TMC5 | TCIRG1 | TMC5 | 11 | 16 | 1 | 1 | 2 | 1 | 1 | 0.13 | 67818362 | 19451282 | tier3 | 3UTR-5UTR | 17611 | NA | 0 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | TET3|KRT1 | TET3 | KRT1 | 2 | 12 | 1 | -1 | 13 | 12 | 11 | 1.6 | 74317174 | 53072007 | tier1 | Out-of-frame | 17678 | NA | 0 |
| PRAD | TCGA-G9-A9S7-01A | TCGA-G9-A9S7 | TFRC|MUTED | TFRC | MUTED | 3 | 6 | -1 | -1 | 8 | 7 | 7 | 0.49 | 195803935 | 8041501 | tier1 | In-frame | 17728 | NA | 0 |
| PRAD | TCGA-ZG-A9LN-01A | TCGA-ZG-A9LN | TFRC|TCTEX1D2 | TFRC | TCTEX1D2 | 3 | 3 | -1 | -1 | 7 | 2 | 1 | 0.12 | 195791180 | 196033883 | tier3 | In-frame | 17730 | NA | 0 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | THSD7B|DARS | THSD7B | DARS | 2 | 2 | 1 | -1 | 3 | 6 | 5 | 0.51 | 137523257 | 136741024 | tier1 | 5UTR-CDS | 17809 | NA | 0 |
| PRAD | TCGA-HC-7213-01A | TCGA-HC-7213 | TLN1|EIF4G1 | TLN1 | EIF4G1 | 9 | 3 | -1 | 1 | 2 | 11 | 11 | 0.012 | 35697334 | 184042892 | tier4 | NA | 17859 | NA | 0 |
| PRAD | TCGA-EJ-5511-01A | TCGA-EJ-5511 | TM2D3|PTRF | TM2D3 | PTRF | 15 | 17 | -1 | -1 | 729 | 337 | 309 | 2.2 | 102190207 | 40557406 | tier1 | In-frame | 17866 | NA | 0 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | TM9SF3|RPP30 | TM9SF3 | RPP30 | 10 | 10 | -1 | 1 | 6 | 22 | 21 | 0.27 | 98346491 | 92655637 | tier1 | In-frame | 17873 | NA | 0 |
| PRAD | TCGA-HC-A632-01A | TCGA-HC-A632 | TM9SF4|ZNF423 | TM9SF4 | ZNF423 | 20 | 16 | 1 | -1 | 27 | 37 | 31 | 0.2 | 30723976 | 49823457 | tier1 | In-frame | 17881 | NA | 0 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | TMED10|PSMD11 | TMED10 | PSMD11 | 14 | 17 | -1 | 1 | 2 | 7 | 7 | 0.43 | 75614367 | 30773963 | tier2 | Out-of-frame | 17916 | NA | 0 |
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