Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-G9-6339-01A | TCGA-G9-6339 | RYBP|CNTN4 | RYBP | CNTN4 | 3 | 3 | -1 | 1 | 9 | 3 | 3 | 0.25 | 72495647 | 2777899 | tier1 | NA | 15211 | NA | 0 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | RYK|KALRN | RYK | KALRN | 3 | 3 | -1 | 1 | 102 | 79 | 70 | 1.1 | 133907681 | 124149503 | tier1 | Out-of-frame | 15215 | NA | 0 |
| PRAD | TCGA-KK-A7AU-01A | TCGA-KK-A7AU | SCARB1|SUB1 | SCARB1 | SUB1 | 12 | 5 | -1 | 1 | 7 | 15 | 11 | 1.4 | 125348141 | 32599067 | tier1 | In-frame | 15392 | NA | 0 |
| PRAD | TCGA-CH-5788-01A | TCGA-CH-5788 | SCMH1|MACF1 | SCMH1 | MACF1 | 1 | 1 | -1 | 1 | 5 | 2 | 1 | 0.019 | 41608550 | 39945470 | tier3 | In-frame | 15419 | non-validated | 0 |
| PRAD | TCGA-V1-A9ZG-01A | TCGA-V1-A9ZG | SCP2|NCAM1 | SCP2 | NCAM1 | 1 | 11 | 1 | 1 | 5 | 2 | 2 | 0.22 | 53393137 | 113126599 | tier1 | Out-of-frame | 15435 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | SCYL1|TRPM8 | SCYL1 | TRPM8 | 11 | 2 | 1 | 1 | 2 | 1 | 1 | 0.54 | 65306175 | 234826043 | tier3 | 3UTR-5UTR | 15447 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | SDK1|CHST12 | SDK1 | CHST12 | 7 | 7 | 1 | 1 | 24 | 25 | 24 | 0.78 | 3861215 | 2472198 | tier1 | CDS-5UTR | 15488 | NA | 0 |
| PRAD | TCGA-CH-5788-01A | TCGA-CH-5788 | SEMA3D|RBM28 | SEMA3D | RBM28 | 7 | 7 | -1 | -1 | 14 | 11 | 11 | 0.051 | 84782924 | 127979845 | tier1 | 5UTR-CDS | 15547 | non-validated | 0 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | SEMA4B|PIAS1 | SEMA4B | PIAS1 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 0.033 | 90728313 | 68479880 | tier3 | 5UTR-CDS | 15555 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | SEMA4D|RGS3 | SEMA4D | RGS3 | 9 | 9 | -1 | 1 | 2 | 2 | 2 | 0.93 | 92112834 | 116241771 | tier2 | 5UTR-CDS | 15564 | NA | 0 |
| PRAD | TCGA-HC-7231-01A | TCGA-HC-7231 | SERINC2|FN1 | SERINC2 | FN1 | 1 | 2 | 1 | -1 | 2 | 2 | 1 | 0.68 | 31907521 | 216274837 | tier3 | 3UTR-CDS | 15631 | NA | 0 |
| PRAD | TCGA-CH-5771-01A | TCGA-CH-5771 | SERINC5|CDYL2 | SERINC5 | CDYL2 | 5 | 16 | -1 | -1 | 2 | 5 | 4 | 0.15 | 79551715 | 80719026 | tier2 | In-frame | 15640 | non-validated | 0 |
| PRAD | TCGA-HC-A6AS-01A | TCGA-HC-A6AS | SERINC5|PPAP2A | SERINC5 | PPAP2A | 5 | 5 | -1 | -1 | 54 | 70 | 68 | 1.3 | 79551715 | 54721867 | tier1 | In-frame | 15643 | NA | 0 |
| PRAD | TCGA-CH-5771-01A | TCGA-CH-5771 | SERINC5|TTC39A | SERINC5 | TTC39A | 5 | 1 | -1 | -1 | 60 | 46 | 43 | 0.43 | 79462206 | 51787497 | tier1 | Out-of-frame | 15645 | non-validated | 0 |
| PRAD | TCGA-VP-A87B-01A | TCGA-VP-A87B | SGMS1|VSTM4 | SGMS1 | VSTM4 | 10 | 10 | -1 | -1 | 11 | 13 | 10 | 3.5 | 52193236 | 50227820 | tier1 | 5UTR-CDS | 15783 | NA | 0 |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | SKIV2L2|BASP1 | SKIV2L2 | BASP1 | 5 | 5 | 1 | 1 | 5 | 3 | 2 | 3.4 | 54711960 | 17275317 | tier1 | CDS-5UTR | 15990 | NA | 0 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | SKIV2L2|F2R | SKIV2L2 | F2R | 5 | 5 | 1 | 1 | 2 | 3 | 3 | 0.16 | 54603975 | 76028139 | tier3 | Out-of-frame | 15993 | NA | 0 |
| PRAD | TCGA-M7-A724-01A | TCGA-M7-A724 | SLC15A4|TMEM132D | SLC15A4 | TMEM132D | 12 | 12 | -1 | -1 | 5 | 3 | 3 | 0.16 | 129299320 | 130185243 | tier1 | Out-of-frame | 16025 | NA | 0 |
| PRAD | TCGA-CH-5743-01A | TCGA-CH-5743 | SLC1A5|STAT6 | SLC1A5 | STAT6 | 19 | 12 | -1 | -1 | 2 | 18 | 16 | 0.41 | 47278142 | 57496773 | tier3 | NA | 16051 | NA | 0 |
| PRAD | TCGA-VN-A88Q-01A | TCGA-VN-A88Q | SLC20A2|AC130352.1 | SLC20A2 | AC130352.1 | 8 | 8 | -1 | 1 | 3 | 11 | 8 | 0.093 | 42329620 | 12388452 | tier1 | Out-of-frame | 16055 | NA | 0 |
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