Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | PTPRJ|PPP2CB | PTPRJ | PPP2CB | 11 | 8 | 1 | -1 | 2 | 5 | 5 | 2 | 48168515 | 30648831 | tier3 | Out-of-frame | 13870 | NA | 0.3812 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | PTPRK|ECHDC1 | PTPRK | ECHDC1 | 6 | 6 | -1 | -1 | 79 | 51 | 48 | 0.57 | 128841404 | 127652175 | tier1 | CDS-5UTR | 13874 | NA | 0 |
| PRAD | TCGA-G9-6333-01A | TCGA-G9-6333 | PTPRK|ECHDC1 | PTPRK | ECHDC1 | 6 | 6 | -1 | -1 | 6 | 23 | 23 | 0.57 | 128561180 | 127611422 | tier2 | Out-of-frame | 13875 | NA | 0 |
| PRAD | TCGA-HC-A8CY-01A | TCGA-HC-A8CY | PTPRM|MC2R | PTPRM | MC2R | 18 | 18 | 1 | -1 | 2 | 3 | 3 | 0.2 | 7774269 | 13885645 | tier3 | CDS-5UTR | 13902 | NA | 0 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | PTTG1IP|CLDN4 | PTTG1IP | CLDN4 | 21 | 7 | -1 | 1 | 2 | 1 | 1 | 0.12 | 46269500 | 73245193 | tier3 | 3UTR-5UTR | 13936 | NA | 0 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | RAP1GDS1|ASTN2 | RAP1GDS1 | ASTN2 | 4 | 9 | 1 | -1 | 4 | 3 | 3 | 0.051 | 99342545 | 119414072 | tier1 | Out-of-frame | 14282 | NA | 0 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | RASA1|CDH12 | RASA1 | CDH12 | 5 | 5 | 1 | -1 | 4 | 5 | 5 | 0.56 | 86564807 | 22212752 | tier1 | CDS-5UTR | 14348 | NA | 0 |
| PRAD | TCGA-ZG-A8QX-01A | TCGA-ZG-A8QX | RASA1|FAM174A | RASA1 | FAM174A | 5 | 5 | 1 | 1 | 9 | 11 | 10 | 2.2 | 86649052 | 99897758 | tier4 | Out-of-frame | 14349 | NA | 0 |
| PRAD | TCGA-HC-7737-01A | TCGA-HC-7737 | RASD1|VPS4A | RASD1 | VPS4A | 17 | 16 | -1 | 1 | 2 | 11 | 8 | 0.038 | 17397751 | 69349911 | tier3 | 3UTR-CDS | 14373 | non-validated | 0 |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | RB1CC1|MMP16 | RB1CC1 | MMP16 | 8 | 8 | -1 | -1 | 3 | 2 | 1 | 0.018 | 53596109 | 89086971 | tier2 | In-frame | 14411 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | RCOR1|KIT | RCOR1 | KIT | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 1.1 | 103148315 | 55561678 | tier3 | In-frame | 14514 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | RGS3|ABCA1 | RGS3 | ABCA1 | 9 | 9 | 1 | -1 | 41 | 36 | 32 | 0.49 | 116226161 | 107602800 | tier1 | Out-of-frame | 14639 | NA | 0 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | RHBDD1|EFR3A | RHBDD1 | EFR3A | 2 | 8 | 1 | 1 | 2 | 1 | 1 | 1 | 227779067 | 132952746 | tier3 | In-frame | 14646 | NA | 0 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | RHOB|ANXA1 | RHOB | ANXA1 | 2 | 9 | 1 | 1 | 2 | 7 | 3 | 0.19 | 20649200 | 75772570 | tier3 | 3UTR-5UTR | 14652 | NA | 0 |
| PRAD | TCGA-V1-A9OA-01A | TCGA-V1-A9OA | RNF121|VASP | RNF121 | VASP | 11 | 19 | 1 | 1 | 12 | 5 | 4 | 2.6 | 71668310 | 46020921 | tier1 | In-frame | 14748 | NA | 0 |
| PRAD | TCGA-KC-A7FD-01A | TCGA-KC-A7FD | RNF170|CSMD1 | RNF170 | CSMD1 | 8 | 8 | -1 | -1 | 6 | 3 | 2 | 0.14 | 42742871 | 3474319 | tier1 | Out-of-frame | 14786 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | ROCK2|NTSR2 | ROCK2 | NTSR2 | 2 | 2 | -1 | -1 | 23 | 12 | 12 | 0.46 | 11484122 | 11798848 | tier1 | Out-of-frame | 14896 | NA | 0 |
| PRAD | TCGA-TP-A8TT-01A | TCGA-TP-A8TT | RP4-761I2.2|TM6SF1 | RP4-761I2.2 | TM6SF1 | 6 | 15 | 1 | 1 | 4 | 2 | 1 | 0.35 | 11094622 | 83781549 | tier3 | Out-of-frame | 14962 | NA | 0 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | RPL8|SCARB1 | RPL8 | SCARB1 | 8 | 12 | -1 | -1 | 2 | 1 | 1 | 0.4 | 146015154 | 125324217 | tier3 | 3UTR-5UTR | 15006 | NA | 0 |
| PRAD | TCGA-EJ-7125-01A | TCGA-EJ-7125 | RPLP2|ACPP | RPLP2 | ACPP | 11 | 3 | 1 | 1 | 2 | 1 | 1 | 100 | 812874 | 132036211 | tier3 | 3UTR-5UTR | 15010 | NA | 0 |
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