Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J9-A52B-01A | TCGA-J9-A52B | PLXNB2|P4HTM | PLXNB2 | P4HTM | 22 | 3 | -1 | 1 | 2 | 7 | 4 | 0.15 | 50713408 | 49038871 | tier3 | 3UTR-CDS | 13073 | NA | 0.3685 |
| PRAD | TCGA-CH-5762-01A | TCGA-CH-5762 | PMEPA1|ETV4 | PMEPA1 | ETV4 | 20 | 17 | -1 | -1 | 470 | 287 | 242 | 0.41 | 56284530 | 41613847 | tier1 | In-frame | 13087 | NA | 0.36166 |
| PRAD | TCGA-J4-A67N-01A | TCGA-J4-A67N | PPAP2A|ARL15 | PPAP2A | ARL15 | 5 | 5 | -1 | -1 | 5 | 3 | 2 | 1.7 | 54830400 | 53467758 | tier1 | Out-of-frame | 13207 | NA | 0.37076 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | PPAP2A|CDC42SE2 | PPAP2A | CDC42SE2 | 5 | 5 | -1 | 1 | 76 | 77 | 70 | 0.86 | 54763697 | 130694902 | tier4 | CDS-5UTR | 13208 | NA | 0.35779 |
| PRAD | TCGA-2A-A8VV-01A | TCGA-2A-A8VV | PPAP2A|CNTLN | PPAP2A | CNTLN | 5 | 9 | -1 | 1 | 48 | 34 | 31 | 0.32 | 54830400 | 17484293 | tier1 | Out-of-frame | 13209 | NA | 0.3532 |
| PRAD | TCGA-J4-A67N-01A | TCGA-J4-A67N | PPAP2A|MAPK1 | PPAP2A | MAPK1 | 5 | 22 | -1 | -1 | 2 | 3 | 3 | 2.2 | 54830400 | 22143097 | tier3 | Out-of-frame | 13210 | NA | 0.38429 |
| PRAD | TCGA-EJ-5522-01A | TCGA-EJ-5522 | PPAP2A|MLPH | PPAP2A | MLPH | 5 | 2 | -1 | 1 | 2 | 46 | 41 | 0.062 | 54720682 | 238428553 | tier4 | 3UTR-CDS | 13211 | NA | 0.35828 |
| PRAD | TCGA-VN-A88K-01A | TCGA-VN-A88K | PPAP2A|SREK1IP1 | PPAP2A | SREK1IP1 | 5 | 5 | -1 | -1 | 8 | 5 | 1 | 0.021 | 54720682 | 64024006 | tier4 | 3UTR-CDS | 13216 | NA | 0.35182 |
| PRAD | TCGA-EJ-A65M-01A | TCGA-EJ-A65M | PPAPDC1B|TMEM66 | PPAPDC1B | TMEM66 | 8 | 8 | -1 | -1 | 3 | 9 | 8 | 0.58 | 38124785 | 29927575 | tier4 | Out-of-frame | 13218 | NA | 0.35053 |
| PRAD | TCGA-EJ-7115-01A | TCGA-EJ-7115 | PPIG|SCN9A | PPIG | SCN9A | 2 | 2 | 1 | -1 | 3 | 3 | 3 | 2.2 | 170441409 | 167163584 | tier1 | NA | 13295 | NA | 0.36694 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | PPM1H|KIAA1467 | PPM1H | KIAA1467 | 12 | 12 | -1 | 1 | 6 | 11 | 9 | 0.28 | 63131282 | 13214509 | tier1 | Out-of-frame | 13322 | NA | 0.34539 |
| PRAD | TCGA-HC-7748-01A | TCGA-HC-7748 | PPP1R16A|CLDN4 | PPP1R16A | CLDN4 | 8 | 7 | 1 | 1 | 2 | 1 | 1 | 0.12 | 145727504 | 73245329 | tier3 | 3UTR-5UTR | 13375 | NA | 0.36548 |
| PRAD | TCGA-2A-A8VV-01A | TCGA-2A-A8VV | PRKAR2A|CACNA1D | PRKAR2A | CACNA1D | 3 | 3 | -1 | 1 | 3 | 3 | 3 | 0.51 | 48845082 | 53769401 | tier1 | Out-of-frame | 13533 | NA | 0.37846 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | PRR15L|RAB5C | PRR15L | RAB5C | 17 | 17 | -1 | -1 | 65 | 25 | 22 | 0.002 | 46035023 | 40282608 | tier1 | 5UTR-5UTR | 13626 | NA | 0.35741 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | PRTG|TCF12 | PRTG | TCF12 | 15 | 15 | -1 | 1 | 2 | 1 | 1 | 0.74 | 56032580 | 57484356 | tier3 | Out-of-frame | 13663 | NA | 0.37084 |
| PRAD | TCGA-YL-A8SA-01A | TCGA-YL-A8SA | PTEN|GRID1 | PTEN | GRID1 | 10 | 10 | 1 | -1 | 7 | 13 | 13 | 1.9 | 89690846 | 87489371 | tier1 | Out-of-frame | 13756 | NA | 0.37995 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | PTEN|NRP1 | PTEN | NRP1 | 10 | 10 | 1 | -1 | 2 | 4 | 4 | 0.16 | 89693008 | 33559784 | tier2 | Out-of-frame | 13758 | NA | 0.38903 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | PTPRD|C9orf92 | PTPRD | C9orf92 | 9 | 9 | -1 | -1 | 16 | 14 | 14 | 0.46 | 8633317 | 16215897 | tier1 | CDS-5UTR | 13848 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 37 | 48 | 41 | 0.043 | 61734656 | 60522712 | tier1 | CDS-5UTR | 13863 | NA | 0.36774 |
| PRAD | TCGA-HC-A9TH-01A | TCGA-HC-A9TH | PTPRG|FRMD4B | PTPRG | FRMD4B | 3 | 3 | 1 | -1 | 7 | 7 | 7 | 0.49 | 61734656 | 69225807 | tier1 | In-frame | 13864 | NA | 0.35972 |
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