Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | PDXDC1|MMP14 | PDXDC1 | MMP14 | 16 | 14 | 1 | 1 | 2 | 10 | 8 | 0.52 | 15131543 | 23305829 | tier3 | NA | 12577 | NA | 0.36122 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | PGM1|SLC16A12 | PGM1 | SLC16A12 | 1 | 10 | 1 | -1 | 4 | 4 | 3 | 0.13 | 64059405 | 91222381 | tier1 | CDS-5UTR | 12665 | NA | 0.3568 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | PHC2|HSP90AA1 | PHC2 | HSP90AA1 | 1 | 14 | -1 | -1 | 3 | 6 | 5 | 0.14 | 33794471 | 102568422 | tier1 | Out-of-frame | 12685 | NA | 0.37706 |
| PRAD | TCGA-YL-A9WY-01A | TCGA-YL-A9WY | PHF15|SGCD | PHF15 | SGCD | 5 | 5 | 1 | 1 | 3 | 5 | 5 | 0.63 | 133873773 | 155756544 | tier1 | CDS-5UTR | 12704 | NA | 0.35852 |
| PRAD | TCGA-VP-A87J-01A | TCGA-VP-A87J | PI4KA|FAM175A | PI4KA | FAM175A | 22 | 4 | -1 | -1 | 4 | 12 | 10 | 2.4 | 21147481 | 84403397 | tier1 | In-frame | 12781 | NA | 0.36175 |
| PRAD | TCGA-EJ-7321-01A | TCGA-EJ-7321 | PICALM|DDX21 | PICALM | DDX21 | 11 | 10 | -1 | 1 | 2 | 2 | 2 | 0.61 | 85668731 | 70723858 | tier4 | NA | 12798 | NA | 0.36186 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | PICK1|EIF4ENIF1 | PICK1 | EIF4ENIF1 | 22 | 22 | 1 | -1 | 4 | 3 | 3 | 3.5 | 38461137 | 31851973 | tier1 | In-frame | 12803 | NA | 0.37364 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | PKHD1|CAGE1 | PKHD1 | CAGE1 | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 0.16 | 51875107 | 7334323 | tier2 | Out-of-frame | 12905 | NA | 0.34679 |
| PRAD | TCGA-G9-6367-01A | TCGA-G9-6367 | PKM2|ACPP | PKM2 | ACPP | 15 | 3 | -1 | 1 | 2 | 1 | 1 | 1 | 72491370 | 132036250 | tier3 | 3UTR-5UTR | 12910 | NA | 0.36576 |
| PRAD | TCGA-EJ-5527-01A | TCGA-EJ-5527 | PLA2G2A|CLCN3 | PLA2G2A | CLCN3 | 1 | 4 | -1 | 1 | 2 | 22 | 10 | 0.8 | 20301925 | 170623929 | tier4 | NA | 12933 | NA | 0.36593 |
| PRAD | TCGA-KK-A7AQ-01A | TCGA-KK-A7AQ | PLA2G2A|FBLN1 | PLA2G2A | FBLN1 | 1 | 22 | -1 | 1 | 2 | 8 | 1 | 1.2 | 20301931 | 45914462 | tier4 | NA | 12934 | NA | 0.36376 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | PLA2G2A|ITGA6 | PLA2G2A | ITGA6 | 1 | 2 | -1 | 1 | 2 | 14 | 12 | 0.017 | 20301931 | 173351992 | tier3 | 3UTR-CDS | 12935 | NA | 0.37049 |
| PRAD | TCGA-G9-7525-01A | TCGA-G9-7525 | PLA2G2A|MBTPS1 | PLA2G2A | MBTPS1 | 1 | 16 | -1 | -1 | 2 | 883 | 861 | 0.52 | 20301931 | 84103643 | tier3 | 3UTR-CDS | 12936 | NA | 0.35452 |
| PRAD | TCGA-YL-A9WH-01A | TCGA-YL-A9WH | PLA2G2A|PLAT | PLA2G2A | PLAT | 1 | 8 | -1 | -1 | 2 | 73 | 45 | 1.1 | 20301925 | 42051245 | tier3 | NA | 12937 | NA | 0.37417 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | PLA2G2A|TAF15 | PLA2G2A | TAF15 | 1 | 17 | -1 | 1 | 2 | 4 | 4 | 100 | 20301931 | 34147336 | tier3 | 3UTR-CDS | 12938 | NA | 0.3761 |
| PRAD | TCGA-TK-A8OK-01A | TCGA-TK-A8OK | PLB1|CAB39 | PLB1 | CAB39 | 2 | 2 | 1 | 1 | 2 | 3 | 3 | 0.2 | 28742630 | 231678764 | tier3 | In-frame | 12953 | NA | 0.36371 |
| PRAD | TCGA-Y6-A9XI-01A | TCGA-Y6-A9XI | PLD1|LMBR1 | PLD1 | LMBR1 | 3 | 7 | -1 | -1 | 10 | 6 | 6 | 0.084 | 171488985 | 156629579 | tier1 | NA | 12978 | NA | 0.36826 |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | PLEKHH2|VSNL1 | PLEKHH2 | VSNL1 | 2 | 2 | 1 | 1 | 7 | 2 | 2 | 0.68 | 43871935 | 17773337 | tier2 | CDS-5UTR | 13032 | NA | 0.36597 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | PLXNA1|CHCHD6 | PLXNA1 | CHCHD6 | 3 | 3 | 1 | 1 | 4 | 4 | 4 | 0.37 | 126710409 | 126445921 | tier1 | In-frame | 13063 | NA | 0.36921 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | PLXNA1|DZIP1L | PLXNA1 | DZIP1L | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 0.32 | 126708630 | 137811386 | tier3 | In-frame | 13064 | NA | 0.37306 |
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