TCSA Copy number

  FCG

  Home

  GESPs

  Search

  Expression

  Copy Number

  Mutation

  Transcript Fusion

  Download

  Help

  About

Copy Number

The putative cancer-associated GESPs driven by SCNAs in each cancer type were identified by four criteria: 1) located in a peak region of a significantly recurrent focal SNCA locus estimated by the genomic identification of significant targets in cancer (GISTIC2) algorithm, (q≤0.25); 2) altered with high frequency and large amplitude (G-score ≥0.1); 3) mRNA reliably detected in at least 10% of tumor specimens in the given cancer type (90th percentile of FPKM value ≥1); and 4) mRNA significantly and positively correlated with copy numbers (Pearson P-value less than 0.001).

Pan-cancer level overall G-score of GESPs that recurrently gained or lost copy number in at least one cancer types

Show entries each page Jump to page
Showing page 36	first page \| previous page \| next page \| last page

				Overall_Gscore		No. of Cancer Types
HGNC Name	Ensembl Gene ID	HGNC Symbol	Genomic Location	Amplification	Deletion	Amplification	Deletion
par-3 family cell polarity regulator	ENSG00000148498	PARD3	chr10:34109560-34815325:-	0	0.37	0	2
small ArfGAP 1	ENSG00000112305	SMAP1	chr6:70667776-70862015:+	0	0.37	0	2
scavenger receptor family member expressed on T cells 1	ENSG00000214279	SCART1	chr10:133453928-133523558:+	0	0.37	0	3
erythrocyte membrane protein band 4.1 like 2	ENSG00000079819	EPB41L2	chr6:130839347-131063322:-	0	0.37	0	3
chondroitin sulfate proteoglycan 5	ENSG00000114646	CSPG5	chr3:47562239-47580792:-	0	0.36	0	2
ATPase copper transporting beta	ENSG00000123191	ATP7B	chr13:51932673-52011494:-	0	0.36	0	2
actinin alpha 1	ENSG00000072110	ACTN1	chr14:68874143-68979440:-	0	0.36	0	2
CD101 molecule	ENSG00000134256	CD101	chr1:117001750-117036476:+	0	0.35	0	2
macrophage stimulating 1 receptor	ENSG00000164078	MST1R	chr3:49887002-49903873:-	0	0.35	0	2
G protein-coupled receptor 107	ENSG00000148358	GPR107	chr9:130053426-130140169:+	0	0.34	0	2
interleukin 17 receptor D	ENSG00000144730	IL17RD	chr3:57089982-57170306:-	0	0.34	0	2
solute carrier family 22 member 3	ENSG00000146477	SLC22A3	chr6:160348268-160452581:+	0	0.34	0	2
EPH receptor B2	ENSG00000133216	EPHB2	chr1:22710839-22921500:+	0	0.34	0	2
C-X-C motif chemokine receptor 5	ENSG00000160683	CXCR5	chr11:118883766-118897799:+	0	0.33	0	2
TNF receptor superfamily member 11a	ENSG00000141655	TNFRSF11A	chr18:62325287-62391292:+	0	0.33	0	3
family with sequence similarity 171 member A2	ENSG00000161682	FAM171A2	chr17:44353215-44363875:-	0	0.33	0	2
chloride intracellular channel 4	ENSG00000169504	CLIC4	chr1:24745357-24844324:+	0	0.33	0	2
melanocortin 1 receptor	ENSG00000258839	MC1R	chr16:89912119-89920977:+	0	0.33	0	3
solute carrier family 1 member 5	ENSG00000105281	SLC1A5	chr19:46774883-46788594:-	0	0.33	0	1
glutamate ionotropic receptor NMDA type subunit 2D	ENSG00000105464	GRIN2D	chr19:48394875-48444931:+	0	0.32	0	1

Showing page 36

first page | previous page | next page | last page

  TCGA

  GDC

  NCI