The Cancer LncRNome Atlas



Cross-cancer Type Analysis

TCLA currently contains data from 13 cancer types of the TCGA studies. The raw data of each platform were retrieved from the TCGA Data Portal and the NCI's Cancer Genomics Hub (CGHub).

Each link below contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs in multiple cancer types.

Please select the analysis type that you are interested in:

   

Detectable lncRNAs in multiple cancer types

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

  Total Page: 164 Total amount: 8189
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Ensembl IDNumber of
Cancer Types
Cancer Types sharing Detectable Expression
ENSG000002293484BLCA; GBM; LAML; UCEC
ENSG0000023620013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023795013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023061510BLCA; BRCA; GBM; HNSC; LAML; LUAD; LUSC; OV; SKCM; UCEC
ENSG0000022572113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023089613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002278577BLCA; BRCA; LUAD; LUSC; OV; PRAD; UCEC
ENSG000002256678BLCA; BRCA; GBM; KIRC; LUAD; LUSC; OV; SKCM
ENSG0000022550610BLCA; BRCA; COAD; HNSC; KIRC; LAML; LUAD; LUSC; OV; UCEC
ENSG0000022480513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023742413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026911312BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002238149BLCA; BRCA; COAD; HNSC; KIRC; LUAD; LUSC; PRAD; UCEC
ENSG0000027249112BLCA; BRCA; COAD; GBM; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027178213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026166411BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; UCEC
ENSG000002270704BLCA; COAD; LAML; PRAD
ENSG0000026699313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027210013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002329933BLCA; PRAD; UCEC
ENSG0000022675413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027017213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027209113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002357413BLCA; HNSC; PRAD
ENSG0000024239612BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023320312BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002332718BLCA; BRCA; GBM; LUAD; LUSC; OV; PRAD; UCEC
ENSG000002609717BLCA; GBM; KIRC; LUAD; LUSC; OV; UCEC
ENSG000002239566BLCA; LUAD; LUSC; OV; PRAD; UCEC
ENSG0000027222613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023245313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023081213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023181612BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022647610BLCA; COAD; GBM; HNSC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027120011BLCA; BRCA; COAD; GBM; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023079811BLCA; BRCA; COAD; GBM; HNSC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002378527BLCA; BRCA; HNSC; KIRC; LAML; LUAD; UCEC
ENSG0000023228412BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023358911BLCA; BRCA; COAD; GBM; HNSC; LAML; LUAD; LUSC; OV; SKCM; UCEC
ENSG000002342647BLCA; COAD; HNSC; LUSC; OV; SKCM; UCEC
ENSG0000027199213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022995613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002250872BLCA; LUSC
ENSG0000023592711BLCA; BRCA; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; UCEC
ENSG000002362687BLCA; GBM; HNSC; LUSC; OV; PRAD; SKCM
ENSG0000027157613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002236537BLCA; BRCA; GBM; KIRC; LUAD; OV; UCEC
ENSG0000026173713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026727213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002375058BLCA; BRCA; GBM; KIRC; LUAD; LUSC; OV; UCEC


  Total Page: 164 Total amount: 8189
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