The Cancer LncRNome Atlas



Cross-cancer Type Analysis

TCLA currently contains data from 13 cancer types of the TCGA studies. The raw data of each platform were retrieved from the TCGA Data Portal and the NCI's Cancer Genomics Hub (CGHub).

Each link below contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs in multiple cancer types.

Please select the analysis type that you are interested in:

   

Detectable lncRNAs in multiple cancer types

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

  Total Page: 164 Total amount: 8189
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Ensembl IDNumber of
Cancer Types
Cancer Types sharing Detectable Expression
ENSG0000023800913BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024186013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022846313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023709413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002366014BLCA; HNSC; OV; UCEC
ENSG000002317096BLCA; BRCA; GBM; HNSC; OV; UCEC
ENSG000002351462BLCA; UCEC
ENSG0000023002113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023537313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024061813BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022832713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023749113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002404539BLCA; BRCA; COAD; HNSC; LUAD; LUSC; PRAD; SKCM; UCEC
ENSG0000017775713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022588013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022879413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023036813BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023069910BLCA; BRCA; GBM; KIRC; LAML; LUAD; LUSC; OV; PRAD; UCEC
ENSG0000022376413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027251213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002238238BLCA; BRCA; COAD; GBM; LUAD; OV; PRAD; UCEC
ENSG0000027214110BLCA; BRCA; COAD; HNSC; KIRC; LUAD; LUSC; OV; PRAD; UCEC
ENSG0000026017913BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023041513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024073113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027245513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002259059BLCA; BRCA; GBM; HNSC; LUAD; LUSC; OV; PRAD; UCEC
ENSG0000022528513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027210613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002720048BLCA; BRCA; GBM; HNSC; LUAD; PRAD; SKCM; UCEC
ENSG0000026973713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026857513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023105013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002335427BLCA; BRCA; COAD; GBM; KIRC; LUAD; UCEC
ENSG0000018287313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024355812BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026989613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027242013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027192113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027184713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002243872BLCA; LUSC
ENSG000002293934BLCA; HNSC; LUSC; PRAD
ENSG0000027244913BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023816413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022803713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000017713313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027208811BLCA; BRCA; COAD; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; UCEC
ENSG0000023826013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022737213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027215313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC


  Total Page: 164 Total amount: 8189
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