The Cancer LncRNome Atlas



Lung Squamous Cell Carcinoma (LUSC)

TCLA currently contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs for each cancer type.

Please select the data type that you are interested in:

 

Detectable lncRNAs in LUSC

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

 
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Ensembl IDChromosomeStartEndStrandDysregulatedFold Change(T/N)
ENSG00000104725chr82480846824814624-Yes (Up)8.33
ENSG00000253476chr82528303725284096-  
ENSG00000246339chr82855371828558981-Yes (Up)2.56
ENSG00000259366chr82891345228914202+Yes (Down)0.41
ENSG00000259607chr82892479628925971+  
ENSG00000251191chr82953143829605625-  
ENSG00000253490chr82960582529656008+Yes (Up)2.63
ENSG00000271869chr83001334630013748-  
ENSG00000272375chr83005492030055564+  
ENSG00000254109chr83023963530242917-Yes (Down)0.10
ENSG00000104691chr83058976430624522+  
ENSG00000272327chr83262364332625477+  
ENSG00000247134chr83285369632902373+  
ENSG00000272338chr83321836133218933-  
ENSG00000253123chr83718819037189502-Yes (Down)0.32
ENSG00000253746chr83726295737264242-Yes (Up)8.33
ENSG00000253161chr83727885937411701-Yes (Up)16.67
ENSG00000253414chr83737392837374539-Yes (Up)5.00
ENSG00000260949chr83792039937921309+Yes (Up)2.86
ENSG00000272128chr83795698937957449+Yes (Up)2.56
ENSG00000272092chr83823988238240979+  
ENSG00000272159chr83826556638266260-  
ENSG00000255201chr83827940738283614+  
ENSG00000253829chr83870238438703957-  
ENSG00000254287chr83977559539778409-  
ENSG00000254143chr84001897740030131+Yes (Down)0.42
ENSG00000253133chr84139167441435887-  
ENSG00000253174chr84139790041402563-Yes (Up)7.14
ENSG00000264578chr84146721141479021-  
ENSG00000260588chr84168568341687452-  
ENSG00000271938chr84199697941997270-  
ENSG00000253408chr84209119342128715-Yes (Up)13.89
ENSG00000254165chr84239267242393447-Yes (Up)2.04
ENSG00000272233chr84240993342410336+  
ENSG00000255366chr84810239548104885+Yes (Up)2.78
ENSG00000269924chr84843995948440710+  
ENSG00000228801chr85281188552859733+Yes (Up)2.17
ENSG00000272024chr85286284452863250+  
ENSG00000253844chr85287401852935534+  
ENSG00000237807chr85442773154436491-  
ENSG00000271722chr85692604656926727+Yes (Down)0.37
ENSG00000272343chr85713524757135732+Yes (Down)0.39
ENSG00000246430chr85740880557472382-Yes (Down)0.04
ENSG00000205293chr85889091758896685+Yes (Up)2.50
ENSG00000167912chr86003159960033905+  
ENSG00000251396chr86129714761429354-  
ENSG00000254802chr86187836161880334-  
ENSG00000270673chr86408028464081001-  
ENSG00000261542chr86412853964130592+  
ENSG00000253554chr86459973765281115-Yes (Down)> 1e-07
ENSG00000272010chr86650408566504707-  
ENSG00000272155chr86662656966627013-  
ENSG00000272192chr86675498766755566+  
ENSG00000245910chr86783391967838633-  
ENSG00000271966chr86825621068257322+Yes (Up)2.04
ENSG00000261658chr87057928470582549-Yes (Up)2.22
ENSG00000246528chr87074634670767206+Yes (Up)2.56
ENSG00000253143chr87138334771392858-  
ENSG00000253967chr87138336971397922+  
ENSG00000260838chr87385938573862680+  
ENSG00000253636chr87396441373975296+Yes (Down)0.49
ENSG00000250295chr87420994674268696-Yes (Up)2.13
ENSG00000253339chr87427114874275023+Yes (Up)4.76
ENSG00000253302chr87433223974353761+Yes (Up)2.00
ENSG00000254288chr87496457575012088+  
ENSG00000253706chr87571101975779174-Yes (Up)58.82
ENSG00000249395chr87613563976236976-Yes (Up)129.87
ENSG00000254266chr87933833879470738-Yes (Up)3.23
ENSG00000260398chr87951818779521940+Yes (Down)0.16
ENSG00000261618chr87974976479752757+Yes (Down)0.17
ENSG00000272138chr88068037780715077+Yes (Up)3.45
ENSG00000272518chr88086870080869616-  
ENSG00000272264chr88094495980945535-Yes (Up)2.04
ENSG00000251867chr88139679681397854-  
ENSG00000254162chr88144724181451370-Yes (Down)0.45
ENSG00000260317chr88145353581455339+  
ENSG00000253214chr88206651482076834+Yes (Down)0.35
ENSG00000272425chr88218763482189805-  
ENSG00000254027chr88219210682193681-  
ENSG00000253898chr88431599384321135+Yes (Down)> 1e-07
ENSG00000260493chr88608431286089297-Yes (Up)2.17
ENSG00000253549chr88635408086377144-  
ENSG00000254231chr88734550387355543-  
ENSG00000271156chr88982054789821137-Yes (Up)3.03
ENSG00000251136chr89062163890769955-  
ENSG00000246792chr89165866991668826+  
ENSG00000253738chr89207213792082417-  
ENSG00000246662chr89422553194712661-Yes (Down)0.31
ENSG00000271971chr89472760694728341-  
ENSG00000253854chr89473180294733395+  
ENSG00000253848chr89475342194756762+  
ENSG00000264448chr89492796294928910-Yes (Up)2.94
ENSG00000253704chr89556595095581973+  
ENSG00000261437chr89564951395651695-Yes (Up)2.08
ENSG00000272509chr89589683795897298+  
ENSG00000253878chr89596226595963624+  
ENSG00000245080chr89607903696085410-Yes (Up)2.22
ENSG00000245970chr89905395499056349+  
ENSG00000271930chr89995582399956326+Yes (Up)2.44
ENSG00000253948chr8100008991100025272-  
ENSG00000253217chr8101349823101362935+Yes (Up)2.27
ENSG00000260368chr8101925475101926616-  
ENSG00000248599chr8102064282102088479+Yes (Up)3.85
ENSG00000253395chr8102134373102138386-Yes (Up)2.63
ENSG00000261087chr8102179033102181857-  
ENSG00000271882chr8102220376102220786+  
ENSG00000254024chr8102473405102504727-  
ENSG00000246263chr8103251622103265561+  
ENSG00000272037chr8103268620103270049+  
ENSG00000253669chr8103817745103822199+  
ENSG00000247081chr8104169218104311000-  
ENSG00000266289chr8104395306104396082-  
ENSG00000271830chr8104493494104493847-  
ENSG00000253477chr8104495626104513904-  
ENSG00000251003chr8106792474107072752-Yes (Up)24.39
ENSG00000254615chr8107282372107285127+Yes (Up)4.00
ENSG00000253582chr8107532702107669776-  
ENSG00000253327chr8117886663117889107+  
ENSG00000253972chr8120227351120259088-  
ENSG00000254343chr8121064419121068440+Yes (Down)0.49
ENSG00000272502chr8121824459121825599+Yes (Down)0.29
ENSG00000248690chr8122651533122656933+  
ENSG00000255364chr8123426571123440790-Yes (Up)2.38
ENSG00000272384chr8123792210123793069-  
ENSG00000272043chr8123792999123793310+  
ENSG00000253258chr8124193878124195028-Yes (Down)> 1e-07
ENSG00000204949chr8124213412124214983-Yes (Up)18.18
ENSG00000271975chr8125318430125320617-  
ENSG00000245149chr8125474726125486817-Yes (Up)2.86
ENSG00000253106chr8125500751125503884+  
ENSG00000272486chr8125591872125592889+  
ENSG00000255080chr8125847126125869758-Yes (Up)3.57
ENSG00000249816chr8125860979125966570+  
ENSG00000253167chr8126052926126057231+Yes (Up)13.70
ENSG00000245164chr8126934552126963493-Yes (Down)0.39
ENSG00000244791chr8127337740127341780+Yes (Up)5.00
ENSG00000254286chr8127570120127725660+  
ENSG00000253438chr8127859300128033259+Yes (Up)2.27
ENSG00000254166chr8128197880128215467-Yes (Up)16.95
ENSG00000247844chr8128220111128231333-Yes (Up)76.92
ENSG00000246228chr8128302062128494384-Yes (Up)12.05
ENSG00000253929chr8128351519128404876+Yes (Up)3.33
ENSG00000249375chr8128698588128746213-Yes (Up)3.03
ENSG00000249859chr8128806779129113499+Yes (Up)6.25
ENSG00000254317chr8130844547130856750+  
ENSG00000270137chr8133838424133839148+Yes (Up)2.27
ENSG00000261220chr8134585426134586104+  
ENSG00000272456chr8135735190135736192+  
ENSG00000259820chr8135804263135810515-  
ENSG00000253288chr8138821687139095813-Yes (Down)0.05
ENSG00000254258chr8140472305140475259-  
ENSG00000259891chr8141515912141518142-  
ENSG00000259758chr8141530255141539600-  
ENSG00000253266chr8142065389142070695+  
ENSG00000253210chr8142136143142140060-  
ENSG00000253307chr8142262385142263391-  
ENSG00000261655chr8142363503142365465-Yes (Down)0.25
ENSG00000244998chr8142400039142402674-  
ENSG00000271959chr8142444645142448054+Yes (Down)0.39
ENSG00000261693chr8143485013143488389+  
ENSG00000234616chr8143738874143763386-  
ENSG00000253196chr8143844534143847845+  
ENSG00000247317chr8144063155144099854-  
ENSG00000253716chr8144362331144363860-Yes (Up)2.08
ENSG00000272172chr8144372569144372791-  
ENSG00000254389chr8144448801144450718-Yes (Up)2.22
ENSG00000253931chr8144494919144499224+Yes (Up)4.35
ENSG00000254338chr8144499849144501320+Yes (Up)6.25
ENSG00000254859chr8144624143144631899-  
ENSG00000254741chr8144661806144662840+  
ENSG00000271912chr8144683416144685394+  
ENSG00000254812chr8144714241144715926-  
ENSG00000181097chr8144778324144780583+  
ENSG00000203499chr8144816310144828507+Yes (Up)8.33
ENSG00000254973chr8144840323144853992-Yes (Up)4.76
ENSG00000214733chr8144871090144872629+  
ENSG00000204791chr8145104030145106423+Yes (Up)109.89
ENSG00000255224chr8145132905145134168-  
ENSG00000232600chr8145660602145665354+  
ENSG00000255182chr8145721001145730827-Yes (Up)5.00
ENSG00000261139chr8145721763145725663-Yes (Up)3.13
ENSG00000265393chr8145737950145739056+Yes (Up)62.50
ENSG00000254533chr8145923999145924570-Yes (Down)0.35
ENSG00000263612chr8145939284145940230+Yes (Down)0.39
ENSG00000255559chr8146228197146231432+Yes (Up)3.23
ENSG00000227518chr92765730891+  
ENSG00000225655chr97270188826+  
ENSG00000227155chr9454304492112-Yes (Down)0.40
ENSG00000226403chr9547317549531+  
ENSG00000236199chr920419002046023-  
ENSG00000236404chr924227022641395-  
ENSG00000232104chr935267233671646+  
ENSG00000235326chr936745463691814+  
ENSG00000237009chr938986423901248+  
ENSG00000225408chr957190215720244-  
ENSG00000236924chr966459566670635+  
ENSG00000225489chr967165486727438+Yes (Up)7.14
ENSG00000225706chr988581308862255+Yes (Down)0.28
ENSG00000270547chr91340637913433052-Yes (Up)2.17
ENSG00000226197chr91344649013487510+  
ENSG00000225472chr91431708414357907+Yes (Down)0.30
ENSG00000260912chr91945320719455171+  
ENSG00000171889chr92145564121559668-Yes (Up)909.09
ENSG00000265194chr92185890921861925-  
ENSG00000240498chr92199477722121096+  
ENSG00000234840chr92264619922824212+  
ENSG00000235453chr93255114232567003+  
ENSG00000233554chr93316697333179981+Yes (Down)0.49
ENSG00000226562chr93358069333605289+Yes (Up)105.26
ENSG00000260947chr93369745733700984+  
ENSG00000228352chr93408433034096223+  
ENSG00000261215chr93466190034666026-  
ENSG00000230074chr93466566234681295+Yes (Down)0.49
ENSG00000269900chr93565774835658015-  
ENSG00000227388chr93577216035790429+  
ENSG00000235387chr93590948035911683+Yes (Down)0.08
ENSG00000233137chr93707989337090398+  
ENSG00000234160chr93750914737510296+  
ENSG00000204860chr93862047138624987+  
ENSG00000204837chr94196161542019580-  
ENSG00000223839chr94246631742474239+  
ENSG00000237357chr94440176644404440+  
ENSG00000235659chr94500190745003117-  
ENSG00000232116chr94548457245488153+  
ENSG00000231212chr94666124246662837-  
ENSG00000204802chr94668542946688137-  
ENSG00000226007chr94684363846846025+  
ENSG00000238113chr96645728566469310+  
ENSG00000234665chr96651348866553911-  
ENSG00000170161chr96655327366555928+  
ENSG00000182021chr96701740067032072-  
ENSG00000225411chr96839787868409893-  
ENSG00000231242chr96908253669108793-  
ENSG00000233178chr97101060971021416-  
ENSG00000204706chr97270073272790804-Yes (Down)0.24
ENSG00000268364chr97280891372873782-  
ENSG00000225434chr97492034674958126+Yes (Down)0.27
ENSG00000229587chr97762474477630952-  
ENSG00000254473chr98632250986328293+  
ENSG00000235298chr98658714886590692+  
ENSG00000226237chr98956361489616948+Yes (Down)0.41
ENSG00000269994chr98962337089657041-Yes (Up)11.49
ENSG00000231632chr99162494991625393-Yes (Down)0.11
ENSG00000224945chr99170351991724849-Yes (Down)0.17
ENSG00000237372chr99231656692334585+  
ENSG00000231107chr99306318493195787-  
ENSG00000260454chr99375933693764153+  
ENSG00000230537chr99386723993869586-Yes (Down)0.22
ENSG00000229694chr99388134493945044+  
ENSG00000237422chr99388142093925369-  
ENSG00000233081chr99418852094189426+Yes (Up)2.70
ENSG00000225511chr99490358094922396+  
ENSG00000227603chr99619761496199403-  
ENSG00000269929chr99693874096940174+Yes (Down)0.10
ENSG00000232063chr99709475897123230+  
ENSG00000231806chr99731735197330409+Yes (Up)14.49
ENSG00000236095chr99766271197667036+  
ENSG00000229065chr99787599097876743+  
ENSG00000271384chr99816927298169944-  
ENSG00000237857chr99817711698189078-Yes (Up)5.88
ENSG00000271155chr99826851798269918+  
ENSG00000271659chr99827632798276802+Yes (Up)3.33
ENSG00000175611chr99852151398638259-  
ENSG00000225194chr99878201498790247-Yes (Down)0.21
ENSG00000224848chr99944933899483403+Yes (Down)0.43
ENSG00000242375chr99995763399959969-  
ENSG00000203279chr999962757100000982-  
ENSG00000254876chr9100000731100059596+  
ENSG00000255036chr9100000779100139569+Yes (Down)0.11
ENSG00000260677chr9100505490100507217+Yes (Up)7.14
ENSG00000267026chr9101609511101634697-  
ENSG00000270412chr9101705619101706057-  
ENSG00000255145chr9102648608102668883-  
ENSG00000270332chr9106842305106855354-  
ENSG00000226334chr9107689834107691173+  
ENSG00000260230chr9111892573111898218-Yes (Up)6.67
ENSG00000259953chr9114794835114800010-Yes (Down)0.37
ENSG00000226609chr9115511182115512736-  
ENSG00000271631chr9115647438115648047+Yes (Down)0.26
ENSG00000228623chr9115759495115774507-  
ENSG00000225684chr9115865618115873780-  
ENSG00000231528chr9115875353115882208+  
ENSG00000226752chr9123587106123616651+  
ENSG00000239593chr9124042141124045008-  
ENSG00000235865chr9124043046124047808-Yes (Down)0.48
ENSG00000261534chr9124577953124581731-Yes (Down)0.39
ENSG00000269979chr9125086887125087594+  
ENSG00000270102chr9125093146125093622+  
ENSG00000261094chr9125699902125702612+  
ENSG00000236901chr9125871773125877756-  
ENSG00000224020chr9127420746127460910+  
ENSG00000271341chr9127704887127705774-Yes (Down)0.40
ENSG00000269909chr9129462577129463312+Yes (Up)149.25
ENSG00000271833chr9130129049130129676+  
ENSG00000225032chr9130578345130584799+Yes (Down)0.37
ENSG00000257524chr9130630143130649066-Yes (Down)0.36
ENSG00000227218chr9130696782130703231+Yes (Up)2.00
ENSG00000269988chr9130870860130871604-  
ENSG00000234771chr9130873450130881013-  
ENSG00000225951chr9131231236131235291-  
ENSG00000228395chr9131291180131314689-  
ENSG00000234705chr9131425413131425857-  
ENSG00000223478chr9131486724131495473+  
ENSG00000267834chr9131766781131767277-  
ENSG00000268707chr9131932713131933219+  
ENSG00000204055chr9131939050131972827+  
ENSG00000224307chr9132044737132048007+Yes (Down)0.13
ENSG00000179082chr9132083295132087184+  
ENSG00000233901chr9132094579132121817+Yes (Up)3.70
ENSG00000204054chr9132245730132275947+  
ENSG00000239353chr9132264269132275965+  
ENSG00000227619chr9132337688132346835+Yes (Up)2.17
ENSG00000270755chr9132806992132807360+  
ENSG00000230289chr9134391945134397616-  
ENSG00000224992chr9135644840135645599-  
ENSG00000175164chr9136125788136150617-Yes (Down)0.49
ENSG00000271875chr9136125788136130950-Yes (Down)0.42
ENSG00000225756chr9136519708136522435-  
ENSG00000235106chr9136890561136899788+  
ENSG00000233936chr9138137542138144554-  
ENSG00000225361chr9138354573138372623-  
ENSG00000226706chr9138395119138398293-  
ENSG00000260193chr9138999654139001270-  
ENSG00000237886chr9139440664139444345+  
ENSG00000228401chr9139543062139554873-Yes (Down)0.05
ENSG00000233016chr9139615818139622636-  
ENSG00000228544chr9139698379139703300-  
ENSG00000260190chr9139831621139832440-  
ENSG00000235117chr9139931492139932407+Yes (Down)0.45
ENSG00000231864chr9139957987139959033+Yes (Up)181.82
ENSG00000260996chr9140188320140190173-Yes (Down)0.35
ENSG00000233013chr9141106637141143444+  
ENSG00000226179chrX281725282586+  
ENSG00000236871chrX15153201518295+  
ENSG00000236017chrX15206621532921+  
ENSG00000223511chrX18514771874878+  
ENSG00000223571chrX22523362254451-  
ENSG00000234449chrX37710513800358-Yes (Up)2.86
ENSG00000205663chrX38094793838787-Yes (Up)10.53
ENSG00000205662chrX38479103855896-  
ENSG00000236120chrX55714625644346-  
ENSG00000234129chrX1098801111129234-Yes (Up)3.45
ENSG00000235385chrX1328416713321571-Yes (Down)0.16
ENSG00000225882chrX1798831718122764-  
ENSG00000237836chrX1890841418912615+  
ENSG00000233785chrX2379110923801073-  
ENSG00000260822chrX2456363324568583+  
ENSG00000241886chrX3071632430740049+  
ENSG00000243055chrX3071811530742291-  
ENSG00000238123chrX3866082138663136-  
ENSG00000235304chrX3916421039186616-  
ENSG00000234636chrX4059465240597950+  
ENSG00000270155chrX4109510941095832+Yes (Down)0.45
ENSG00000223714chrX4113499241136031+Yes (Up)2.38
ENSG00000231566chrX4570732845710920-Yes (Up)8.33
ENSG00000236751chrX4618535946187080-  
ENSG00000230844chrX4640492846407671+  
ENSG00000267064chrX4751823247519776+  
ENSG00000224292chrX4836491148367226-  
ENSG00000228343chrX4843816248439545-  
ENSG00000270012chrX4912951749132231+  
ENSG00000234390chrX4964189249643844-  
ENSG00000229151chrX5109979651139314-  
ENSG00000226530chrX5113936351208513+  
ENSG00000227486chrX5593455656041606+  
ENSG00000230105chrX5664482456650891+Yes (Up)2.63
ENSG00000204272chrX5675569256844813+  
ENSG00000226310chrX5714809557153676+  
ENSG00000231669chrX6480826164820630+Yes (Down)0.09
ENSG00000237311chrX6521959365220913+Yes (Up)2.86
ENSG00000260118chrX6723331267234743-Yes (Down)0.36
ENSG00000203588chrX6938369269385056-  
ENSG00000231651chrX6967280869675844-  
ENSG00000228427chrX7040340970418025-Yes (Down)0.35
ENSG00000215115chrX7093422170938135-  
ENSG00000215113chrX7098314070987054+  
ENSG00000269911chrX7199743271998921+  
ENSG00000229807chrX7304048673072588-  
ENSG00000225470chrX7316415973290243+  
ENSG00000228906chrX7316880873169393+  
ENSG00000230590chrX7318379073513409-  
ENSG00000270223chrX7322922473231303-  
ENSG00000271430chrX7342006473461983-  
ENSG00000271533chrX7342981173433495-  
ENSG00000236256chrX9668625796897588-  
ENSG00000261295chrX9992832799928978+  
ENSG00000228609chrX100258821100262962-  
ENSG00000271147chrX101854440101969599+  
ENSG00000223546chrX102024089102140334+  
ENSG00000239407chrX102139342102161086+  
ENSG00000234405chrX102752451102755245+  
ENSG00000231154chrX102942212102946700+  
ENSG00000236064chrX107137827107179210-Yes (Up)9.09
ENSG00000261409chrX107963179107968174-Yes (Up)4.55
ENSG00000237863chrX107979770107982133+Yes (Up)5.56
ENSG00000243736chrX108867473108877915-  
ENSG00000260802chrX110754890110765627+Yes (Down)0.21
ENSG00000271826chrX114752490114797058-  
ENSG00000237903chrX118556880118557510+  
ENSG00000224281chrX118599997118603061-  
ENSG00000227285chrX119055224119056803-Yes (Down)0.36
ENSG00000258545chrX119170201119280760+Yes (Down)0.08
ENSG00000244439chrX119745184119754929+  
ENSG00000229033chrX122867024122868144+  
ENSG00000232412chrX123093083123095191-  
ENSG00000213468chrX130836678130964671-Yes (Up)9.09
ENSG00000232160chrX131351175131566890+  
ENSG00000223749chrX133677367133680741-  
ENSG00000227060chrX133684003133693953+Yes (Up)2.22
ENSG00000196972chrX134229058134232664-  
ENSG00000178947chrX134555868134561999+Yes (Down)0.49
ENSG00000233093chrX135721702135724588+Yes (Down)0.16
ENSG00000232611chrX135923090135929956-  
ENSG00000234062chrX135991554136103789+  
ENSG00000236337chrX147028461147029103+  
ENSG00000241489chrX148564621148614672-  
ENSG00000238039chrX148593039148607803-  
ENSG00000241769chrX148614831148622358-  
ENSG00000269993chrX150350858150351327+Yes (Up)12.20
ENSG00000229967chrX151072903151082440-Yes (Up)34.48
ENSG00000266560chrX151283466151307028-  
ENSG00000197463chrX151876743151883038-Yes (Up)4761.90
ENSG00000184324chrX151922445151928738+Yes (Up)25.00
ENSG00000224216chrX154564167154581271-  
ENSG00000270726chrX155233883155255299+Yes (Down)0.26
ENSG00000185203chrX155244288155246502-  
ENSG00000233070chrY28348852870667-  
ENSG00000231535chrY28709532970313+Yes (Down)0.43
ENSG00000239204chrY1446580414468226+  
ENSG00000233864chrY1477426514804162+  
ENSG00000230663chrY1966468019691634-  
ENSG00000176728chrY2103438721239302-Yes (Down)0.25
ENSG00000260197chrY2185382721856492-Yes (Down)0.31


 
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