The Cancer LncRNome Atlas



Head and Neck Squamous Cell Carcinoma (HNSC)

TCLA currently contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs for each cancer type.

Please select the data type that you are interested in:

 

Detectable lncRNAs in HNSC

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

 
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Ensembl IDChromosomeStartEndStrandDysregulatedFold Change(T/N)
ENSG00000253196chr8143844534143847845+  
ENSG00000253715chr8143866790143893536+  
ENSG00000247317chr8144063155144099854-  
ENSG00000253716chr8144362331144363860-  
ENSG00000272172chr8144372569144372791-  
ENSG00000254389chr8144448801144450718-  
ENSG00000254338chr8144499849144501320+  
ENSG00000254859chr8144624143144631899-  
ENSG00000254741chr8144661806144662840+  
ENSG00000271912chr8144683416144685394+  
ENSG00000181097chr8144778324144780583+Yes (Up)2.86
ENSG00000203499chr8144816310144828507+  
ENSG00000254973chr8144840323144853992-  
ENSG00000214733chr8144871090144872629+  
ENSG00000204791chr8145104030145106423+  
ENSG00000255224chr8145132905145134168-  
ENSG00000232600chr8145660602145665354+  
ENSG00000255182chr8145721001145730827-  
ENSG00000261139chr8145721763145725663-  
ENSG00000265393chr8145737950145739056+  
ENSG00000227518chr92765730891+  
ENSG00000227155chr9454304492112-  
ENSG00000226403chr9547317549531+  
ENSG00000236199chr920419002046023-  
ENSG00000236404chr924227022641395-  
ENSG00000232104chr935267233671646+  
ENSG00000235326chr936745463691814+  
ENSG00000236924chr966459566670635+  
ENSG00000225489chr967165486727438+Yes (Up)2.44
ENSG00000225706chr988581308862255+  
ENSG00000270547chr91340637913433052-  
ENSG00000226197chr91344649013487510+  
ENSG00000260912chr91945320719455171+  
ENSG00000171889chr92145564121559668-  
ENSG00000265194chr92185890921861925-Yes (Up)2.08
ENSG00000240498chr92199477722121096+  
ENSG00000234840chr92264619922824212+  
ENSG00000235453chr93255114232567003+  
ENSG00000233554chr93316697333179981+  
ENSG00000226562chr93358069333605289+  
ENSG00000260947chr93369745733700984+  
ENSG00000233776chr93373297333738414-  
ENSG00000261215chr93466190034666026-  
ENSG00000230074chr93466566234681295+  
ENSG00000269900chr93565774835658015-  
ENSG00000235387chr93590948035911683+  
ENSG00000233137chr93707989337090398+  
ENSG00000234160chr93750914737510296+  
ENSG00000204860chr93862047138624987+  
ENSG00000204837chr94196161542019580-  
ENSG00000223839chr94246631742474239+Yes (Down)0.35
ENSG00000237357chr94440176644404440+  
ENSG00000235659chr94500190745003117-  
ENSG00000232116chr94548457245488153+  
ENSG00000231212chr94666124246662837-  
ENSG00000204802chr94668542946688137-  
ENSG00000226007chr94684363846846025+  
ENSG00000238113chr96645728566469310+  
ENSG00000234665chr96651348866553911-  
ENSG00000170161chr96655327366555928+  
ENSG00000182021chr96701740067032072-  
ENSG00000233178chr97101060971021416-  
ENSG00000204706chr97270073272790804-  
ENSG00000268364chr97280891372873782-  
ENSG00000225434chr97492034674958126+  
ENSG00000229587chr97762474477630952-  
ENSG00000254473chr98632250986328293+  
ENSG00000235298chr98658714886590692+Yes (Down)> 1e-07
ENSG00000226237chr98956361489616948+Yes (Down)0.45
ENSG00000269994chr98962337089657041-  
ENSG00000231632chr99162494991625393-  
ENSG00000224945chr99170351991724849-  
ENSG00000231107chr99306318493195787-Yes (Up)2.94
ENSG00000260454chr99375933693764153+  
ENSG00000230537chr99386723993869586-  
ENSG00000229694chr99388134493945044+  
ENSG00000237422chr99388142093925369-  
ENSG00000233081chr99418852094189426+  
ENSG00000225511chr99490358094922396+  
ENSG00000227603chr99619761496199403-  
ENSG00000269929chr99693874096940174+  
ENSG00000232063chr99709475897123230+  
ENSG00000231806chr99731735197330409+Yes (Up)5.88
ENSG00000271384chr99816927298169944-  
ENSG00000237857chr99817711698189078-Yes (Up)2.22
ENSG00000271155chr99826851798269918+  
ENSG00000271659chr99827632798276802+  
ENSG00000175611chr99852151398638259-  
ENSG00000225194chr99878201498790247-  
ENSG00000224848chr99944933899483403+  
ENSG00000242375chr99995763399959969-  
ENSG00000203279chr999962757100000982-  
ENSG00000254876chr9100000731100059596+  
ENSG00000255036chr9100000779100139569+  
ENSG00000260677chr9100505490100507217+  
ENSG00000267026chr9101609511101634697-Yes (Down)0.01
ENSG00000270412chr9101705619101706057-  
ENSG00000255145chr9102648608102668883-Yes (Down)0.49
ENSG00000270332chr9106842305106855354-  
ENSG00000226334chr9107689834107691173+  
ENSG00000259953chr9114794835114800010-  
ENSG00000228623chr9115759495115774507-  
ENSG00000225684chr9115865618115873780-Yes (Up)71.43
ENSG00000231528chr9115875353115882208+Yes (Up)5.00
ENSG00000227482chr9116413236116445135+  
ENSG00000234692chr9118014817118016530-  
ENSG00000226752chr9123587106123616651+  
ENSG00000239593chr9124042141124045008-  
ENSG00000235865chr9124043046124047808-  
ENSG00000261534chr9124577953124581731-  
ENSG00000237548chr9124646915124725998-Yes (Up)5.26
ENSG00000269979chr9125086887125087594+  
ENSG00000270102chr9125093146125093622+  
ENSG00000269970chr9125134884125135104+  
ENSG00000261094chr9125699902125702612+  
ENSG00000236901chr9125871773125877756-  
ENSG00000224020chr9127420746127460910+Yes (Up)2.22
ENSG00000271341chr9127704887127705774-  
ENSG00000224842chr9129351873129375979-Yes (Down)0.44
ENSG00000269909chr9129462577129463312+  
ENSG00000271833chr9130129049130129676+Yes (Up)2.04
ENSG00000225032chr9130578345130584799+  
ENSG00000257524chr9130630143130649066-  
ENSG00000227218chr9130696782130703231+  
ENSG00000269988chr9130870860130871604-  
ENSG00000234771chr9130873450130881013-  
ENSG00000228395chr9131291180131314689-  
ENSG00000234705chr9131425413131425857-  
ENSG00000223478chr9131486724131495473+Yes (Up)2.22
ENSG00000267834chr9131766781131767277-  
ENSG00000268707chr9131932713131933219+  
ENSG00000204055chr9131939050131972827+  
ENSG00000224307chr9132044737132048007+Yes (Down)0.24
ENSG00000233901chr9132094579132121817+  
ENSG00000204054chr9132245730132275947+  
ENSG00000227619chr9132337688132346835+  
ENSG00000230289chr9134391945134397616-  
ENSG00000224992chr9135644840135645599-  
ENSG00000175164chr9136125788136150617-Yes (Down)0.30
ENSG00000271875chr9136125788136130950-Yes (Down)0.25
ENSG00000225756chr9136519708136522435-Yes (Up)2.13
ENSG00000235106chr9136890561136899788+  
ENSG00000225361chr9138354573138372623-  
ENSG00000226706chr9138395119138398293-Yes (Up)2.08
ENSG00000260193chr9138999654139001270-  
ENSG00000237886chr9139440664139444345+  
ENSG00000228401chr9139543062139554873-  
ENSG00000233016chr9139615818139622636-  
ENSG00000228544chr9139698379139703300-  
ENSG00000260190chr9139831621139832440-  
ENSG00000235117chr9139931492139932407+  
ENSG00000231864chr9139957987139959033+  
ENSG00000260996chr9140188320140190173-Yes (Up)2.17
ENSG00000233013chr9141106637141143444+  
ENSG00000226179chrX281725282586+  
ENSG00000236871chrX15153201518295+  
ENSG00000236017chrX15206621532921+  
ENSG00000223511chrX18514771874878+  
ENSG00000223571chrX22523362254451-  
ENSG00000234449chrX37710513800358-  
ENSG00000205663chrX38094793838787-  
ENSG00000205662chrX38479103855896-  
ENSG00000236120chrX55714625644346-Yes (Up)2.50
ENSG00000234129chrX1098801111129234-  
ENSG00000235385chrX1328416713321571-Yes (Up)6.25
ENSG00000237836chrX1890841418912615+  
ENSG00000233785chrX2379110923801073-  
ENSG00000260822chrX2456363324568583+  
ENSG00000243055chrX3071811530742291-  
ENSG00000238123chrX3866082138663136-  
ENSG00000235304chrX3916421039186616-Yes (Up)2.27
ENSG00000234636chrX4059465240597950+  
ENSG00000270155chrX4109510941095832+  
ENSG00000231566chrX4570732845710920-  
ENSG00000236751chrX4618535946187080-  
ENSG00000230844chrX4640492846407671+  
ENSG00000267064chrX4751823247519776+  
ENSG00000224292chrX4836491148367226-  
ENSG00000228343chrX4843816248439545-  
ENSG00000270012chrX4912951749132231+Yes (Up)2.56
ENSG00000234390chrX4964189249643844-  
ENSG00000227486chrX5593455656041606+  
ENSG00000204272chrX5675569256844813+  
ENSG00000231669chrX6480826164820630+  
ENSG00000237311chrX6521959365220913+Yes (Down)0.42
ENSG00000260118chrX6723331267234743-  
ENSG00000228427chrX7040340970418025-  
ENSG00000237265chrX7088284570885603-  
ENSG00000215115chrX7093422170938135-  
ENSG00000215113chrX7098314070987054+  
ENSG00000269911chrX7199743271998921+  
ENSG00000229807chrX7304048673072588-  
ENSG00000225470chrX7316415973290243+  
ENSG00000228906chrX7316880873169393+  
ENSG00000230590chrX7318379073513409-  
ENSG00000270223chrX7322922473231303-  
ENSG00000271430chrX7342006473461983-  
ENSG00000271533chrX7342981173433495-Yes (Up)2.08
ENSG00000236256chrX9668625796897588-  
ENSG00000261295chrX9992832799928978+  
ENSG00000228609chrX100258821100262962-  
ENSG00000271147chrX101854440101969599+  
ENSG00000223546chrX102024089102140334+  
ENSG00000239407chrX102139342102161086+  
ENSG00000234405chrX102752451102755245+  
ENSG00000236064chrX107137827107179210-Yes (Up)3.85
ENSG00000243736chrX108867473108877915-  
ENSG00000271826chrX114752490114797058-Yes (Up)4.17
ENSG00000224281chrX118599997118603061-  
ENSG00000227285chrX119055224119056803-  
ENSG00000244439chrX119745184119754929+  
ENSG00000229033chrX122867024122868144+Yes (Up)8.33
ENSG00000232412chrX123093083123095191-  
ENSG00000213468chrX130836678130964671-  
ENSG00000232160chrX131351175131566890+  
ENSG00000223749chrX133677367133680741-Yes (Up)3.85
ENSG00000196972chrX134229058134232664-  
ENSG00000178947chrX134555868134561999+Yes (Down)0.37
ENSG00000233093chrX135721702135724588+  
ENSG00000232611chrX135923090135929956-  
ENSG00000234062chrX135991554136103789+  
ENSG00000241489chrX148564621148614672-  
ENSG00000238039chrX148593039148607803-  
ENSG00000241769chrX148614831148622358-  
ENSG00000269993chrX150350858150351327+Yes (Up)5.88
ENSG00000197463chrX151876743151883038-Yes (Up)384.62
ENSG00000184324chrX151922445151928738+Yes (Up)12.50
ENSG00000224216chrX154564167154581271-  
ENSG00000270726chrX155233883155255299+Yes (Down)0.40
ENSG00000233070chrY28348852870667-  
ENSG00000231535chrY28709532970313+Yes (Down)0.37
ENSG00000233864chrY1477426514804162+  
ENSG00000230663chrY1966468019691634-  
ENSG00000176728chrY2103438721239302-Yes (Down)0.16
ENSG00000260197chrY2185382721856492-  


 
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