Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | BAZ2A|PRIM1 | BAZ2A | PRIM1 | 12 | 12 | -1 | -1 | 38 | 51 | 48 | 0.46 | 57006799 | 57128029 | tier1 | In-frame | 1943 | NA | 0.36757 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | BAZ2A|ACVR1B | BAZ2A | ACVR1B | 12 | 12 | -1 | 1 | 14 | 11 | 11 | 0.41 | 57023909 | 52369049 | tier1 | 5UTR-5UTR | 1939 | NA | 0.38814 |
| LUAD | TCGA-49-6745-01A | TCGA-49-6745 | BAZ2A|BIN2 | BAZ2A | BIN2 | 12 | 12 | -1 | -1 | 25 | 31 | 27 | 0.7 | 57023909 | 51686128 | tier1 | 5UTR-CDS | 1940 | NA | 0.36615 |
| LUSC | TCGA-60-2709-01A | TCGA-60-2709 | BAZ2A|PRIM1 | BAZ2A | PRIM1 | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 0.46 | 57008798 | 57128029 | tier1 | In-frame | 1942 | NA | 0.36757 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | BAZ2A|NACA | BAZ2A | NACA | 12 | 12 | -1 | -1 | 3 | 75 | 42 | 0.17 | 57023909 | 57119237 | tier1 | NA | 1941 | NA | 0.37515 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | SIRT6|CERS4 | SIRT6 | CERS4 | 19 | 19 | -1 | 1 | 14 | 4 | 4 | 0.009 | 4175677 | 8315960 | tier1 | CDS-5UTR | 15961 | NA | 0 |
| LUSC | TCGA-85-8277-01A | TCGA-85-8277 | SIRT6|CREB3L3 | SIRT6 | CREB3L3 | 19 | 19 | -1 | 1 | 54 | 28 | 27 | 0.15 | 4180779 | 4156995 | tier1 | Out-of-frame | 15962 | validated | 0 |
| HNSC | TCGA-CV-7415-01A | TCGA-CV-7415 | SMARCA2|DMRT1 | SMARCA2 | DMRT1 | 9 | 9 | 1 | 1 | 18 | 8 | 6 | 0.011 | 2088613 | 916763 | tier1 | In-frame | 16366 | NA | 0 |
| PAAD | TCGA-3A-A9IR-01A | TCGA-3A-A9IR | SMARCA2|BEND2 | SMARCA2 | BEND2 | 9 | X | 1 | -1 | 36 | 20 | 17 | 0.97 | 2039900 | 18213562 | tier1 | In-frame | 16365 | NA | 0 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | SMARCA2|AC074212.3 | SMARCA2 | AC074212.3 | 9 | 19 | 1 | 1 | 4 | 10 | 10 | 0.36 | 2123937 | 46238635 | tier1 | NA | 16364 | NA | 0 |
| BLCA | TCGA-K4-A6MB-01A | TCGA-K4-A6MB | KAT6A|VPS13B | KAT6A | VPS13B | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 0.11 | 41838364 | 100568678 | tier2 | Out-of-frame | 8536 | NA | 0.34524 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | KAT6A|ADAM2 | KAT6A | ADAM2 | 8 | 8 | -1 | -1 | 226 | 162 | 151 | 0.88 | 41905896 | 39627094 | tier1 | Out-of-frame | 8523 | NA | 0.35288 |
| BRCA | TCGA-A8-A06T-01A | TCGA-A8-A06T | KAT6A|IKBKB | KAT6A | IKBKB | 8 | 8 | -1 | 1 | 11 | 7 | 7 | 3.6 | 41905896 | 42146152 | tier1 | In-frame | 8529 | NA | 0.38111 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | KAT6A|IKBKB | KAT6A | IKBKB | 8 | 8 | -1 | 1 | 8 | 4 | 4 | 3.6 | 41905896 | 42162705 | tier1 | Out-of-frame | 8530 | NA | 0.38111 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | KAT6A|KLK4 | KAT6A | KLK4 | 8 | 19 | -1 | -1 | 8 | 5 | 5 | 1.5 | 41798360 | 51412085 | tier1 | Out-of-frame | 8531 | NA | 0.34788 |
| BRCA | TCGA-BH-A202-01A | TCGA-BH-A202 | KAT6A|MSR1 | KAT6A | MSR1 | 8 | 8 | -1 | -1 | 55 | 47 | 42 | 0.34 | 41905896 | 16035501 | tier1 | CDS-5UTR | 8532 | NA | 0.35117 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | KAT6A|GOT1L1 | KAT6A | GOT1L1 | 8 | 8 | -1 | -1 | 4 | 3 | 3 | 0.037 | 41905896 | 37794575 | tier1 | In-frame | 8528 | NA | 0.33498 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | KAT6A|RAB11FIP1 | KAT6A | RAB11FIP1 | 8 | 8 | -1 | -1 | 6 | 2 | 2 | 0.005 | 41905896 | 37735069 | tier1 | Out-of-frame | 8533 | NA | 0.34983 |
| LUSC | TCGA-85-8666-01A | TCGA-85-8666 | KAT6A|AGPAT6 | KAT6A | AGPAT6 | 8 | 8 | -1 | 1 | 2 | 4 | 4 | 0.6 | 41832222 | 41455811 | tier2 | CDS-5UTR | 8525 | NA | 0.33523 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | KAT6A|CSMD1 | KAT6A | CSMD1 | 8 | 8 | -1 | -1 | 3 | 5 | 4 | 0.33 | 41905896 | 4495080 | tier1 | Out-of-frame | 8527 | NA | 0.33226 |
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