Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
| Showing page 7 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | CREBBP|GLYR1 | CREBBP | GLYR1 | 16 | 16 | -1 | -1 | 3 | 2 | 2 | 0.42 | 3900298 | 4882913 | tier1 | Out-of-frame | 4203 | NA | 0.38552 |
| UCEC | TCGA-KP-A3VZ-01A | TCGA-KP-A3VZ | CREBBP|IFT140 | CREBBP | IFT140 | 16 | 16 | -1 | -1 | 15 | 14 | 11 | 0.048 | 3860604 | 1642589 | tier1 | In-frame | 4205 | NA | 0.38782 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | CREBBP|RANBP3 | CREBBP | RANBP3 | 16 | 19 | -1 | -1 | 13 | 7 | 7 | 1.3 | 3900298 | 5941846 | tier1 | In-frame | 4211 | NA | 0.38879 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | BAZ1B|BCL7B | BAZ1B | BCL7B | 7 | 7 | -1 | -1 | 16 | 9 | 9 | 0.43 | 72879769 | 72966572 | tier1 | In-frame | 1933 | NA | 0.36693 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | BAZ1B|MLXIPL | BAZ1B | MLXIPL | 7 | 7 | -1 | -1 | 18 | 7 | 7 | 8.7 | 72873866 | 73014025 | tier1 | Out-of-frame | 1936 | non-validated | 0.36924 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | BAZ1B|POMZP3 | BAZ1B | POMZP3 | 7 | 7 | -1 | -1 | 10 | 6 | 6 | 0.008 | 72873866 | 76241130 | tier1 | In-frame | 1937 | NA | 0.37124 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | BAZ1B|ZP3 | BAZ1B | ZP3 | 7 | 7 | -1 | 1 | 11 | 9 | 9 | 0.11 | 72873866 | 76069567 | tier1 | In-frame | 1938 | NA | 0.37023 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | BAZ1B|MLXIPL | BAZ1B | MLXIPL | 7 | 7 | -1 | -1 | 3 | 4 | 4 | 8.7 | 72903524 | 73030507 | tier1 | Out-of-frame | 1935 | non-validated | 0.36924 |
| UCEC | TCGA-EY-A2OQ-01A | TCGA-EY-A2OQ | BAZ1B|EDEM3 | BAZ1B | EDEM3 | 7 | 1 | -1 | -1 | 2 | 4 | 3 | 1.4 | 72861594 | 184706845 | tier2 | Out-of-frame | 1934 | NA | 0.367 |
| BLCA | TCGA-FD-A43P-01A | TCGA-FD-A43P | ZMYND11|CDH18 | ZMYND11 | CDH18 | 10 | 5 | 1 | -1 | 4 | 7 | 7 | 0.55 | 267296 | 20255614 | tier1 | CDS-5UTR | 20337 | NA | 0 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | ZMYND11|SORBS2 | ZMYND11 | SORBS2 | 10 | 4 | 1 | -1 | 99 | 32 | 29 | 0.27 | 293406 | 186515089 | tier1 | In-frame | 20340 | non-validated | 0 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | ZMYND11|LYZL1 | ZMYND11 | LYZL1 | 10 | 10 | 1 | 1 | 3 | 27 | 25 | 0.44 | 181499 | 29599039 | tier1 | 5UTR-CDS | 20338 | NA | 0 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | ZMYND11|PCDH15 | ZMYND11 | PCDH15 | 10 | 10 | 1 | -1 | 4 | 35 | 30 | 0.12 | 226068 | 55849823 | tier1 | 5UTR-CDS | 20339 | NA | 0 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | BRD9|STARD3 | BRD9 | STARD3 | 5 | 17 | -1 | 1 | 82 | 1030 | 915 | 2.7 | 876216 | 37813261 | tier1 | In-frame | 2206 | NA | 0.34627 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | BRD9|TERT | BRD9 | TERT | 5 | 5 | -1 | -1 | 6 | 57 | 17 | 0.008 | 891270 | 1282739 | tier1 | In-frame | 2208 | NA | 0.37048 |
| KIRP | TCGA-2Z-A9J2-01A | TCGA-2Z-A9J2 | BRD9|TERT | BRD9 | TERT | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.008 | 892721 | 1282739 | tier2 | In-frame | 2207 | NA | 0.37048 |
| LUSC | TCGA-77-7138-01A | TCGA-77-7138 | BRD9|CBFB | BRD9 | CBFB | 5 | 16 | -1 | 1 | 4 | 4 | 4 | 0.02 | 884053 | 67063630 | tier1 | In-frame | 2204 | NA | 0.36071 |
| LUSC | TCGA-90-6837-01A | TCGA-90-6837 | BRD9|CEP72 | BRD9 | CEP72 | 5 | 5 | -1 | 1 | 42 | 12 | 12 | 2.4 | 891270 | 647920 | tier1 | In-frame | 2205 | NA | 0.35751 |
| BRCA | TCGA-AN-A0FZ-01A | TCGA-AN-A0FZ | HDAC9|PPL | HDAC9 | PPL | 7 | 16 | 1 | -1 | 2 | 2 | 1 | 1 | 18201972 | 4960950 | tier3 | Out-of-frame | 7640 | NA | 0.37155 |
| LGG | TCGA-CS-6188-01A | TCGA-CS-6188 | HDAC9|AC010859.1 | HDAC9 | AC010859.1 | 7 | 8 | 1 | 1 | 4 | 3 | 3 | 0.092 | 18126836 | 98078237 | tier1 | 5UTR-CDS | 7636 | NA | 0.36199 |
|
Showing page 7 |
first page | previous page | next page | last page |
Copyright © 2015 University of Pennsylvania. All Rights Reserved.