Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A1LG-01A | TCGA-E2-A1LG | TRAPPC10|BRWD1 | TRAPPC10 | BRWD1 | 21 | 21 | 1 | -1 | 30 | 59 | 54 | 0.26 | 45432441 | 40630598 | tier1 | In-frame | 18567 | validated | 0 |
| LGG | TCGA-DU-6406-01A | TCGA-DU-6406 | TTC3|BRWD1 | TTC3 | BRWD1 | 21 | 21 | 1 | -1 | 14 | 8 | 6 | 0.11 | 38498443 | 40636611 | tier1 | Out-of-frame | 18845 | NA | 0 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | MTUS2|SIRT7 | MTUS2 | SIRT7 | 13 | 17 | 1 | -1 | 2 | 6 | 5 | 1.1 | 30054501 | 79875843 | tier2 | In-frame | 10850 | NA | 0.35209 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | RAD51B|BAZ1A | RAD51B | BAZ1A | 14 | 14 | 1 | -1 | 3 | 1 | 1 | 1.9 | 68353921 | 35228052 | tier3 | Out-of-frame | 14166 | NA | 0 |
| BRCA | TCGA-A2-A0CY-01A | TCGA-A2-A0CY | RP11-176H8.1|BAZ1A | RP11-176H8.1 | BAZ1A | 14 | 14 | -1 | -1 | 2 | 3 | 3 | 0.35 | 31922481 | 35228052 | tier4 | In-frame | 14923 | NA | 0 |
| LUAD | TCGA-64-1679-01A | TCGA-64-1679 | ZNF253|BAZ1A | ZNF253 | BAZ1A | 19 | 14 | 1 | -1 | 12 | 3 | 3 | 1.7 | 19976808 | 35280242 | tier1 | Out-of-frame | 20418 | NA | 0 |
| PRAD | TCGA-KK-A6E5-01A | TCGA-KK-A6E5 | CALR|BRD2 | CALR | BRD2 | 19 | 6 | 1 | 1 | 3 | 25 | 2 | 0.095 | 13055304 | 32944339 | tier1 | 3UTR-CDS | 2911 | NA | 0.37852 |
| PRAD | TCGA-CH-5790-01A | TCGA-CH-5790 | PPP3CA|BRD2 | PPP3CA | BRD2 | 4 | 6 | -1 | 1 | 2 | 7 | 1 | 0.82 | 101945485 | 32944339 | tier4 | 3UTR-CDS | 13421 | NA | 0.3759 |
| BLCA | TCGA-UY-A9PB-01A | TCGA-UY-A9PB | CREBBP|ADCY9 | CREBBP | ADCY9 | 16 | 16 | -1 | -1 | 4 | 2 | 2 | 0.07 | 3929833 | 4016967 | tier1 | Out-of-frame | 4199 | NA | 0.38677 |
| BLCA | TCGA-GU-A42R-01A | TCGA-GU-A42R | CREBBP|CASKIN1 | CREBBP | CASKIN1 | 16 | 16 | -1 | -1 | 48 | 28 | 24 | 0.052 | 3794895 | 2240359 | tier1 | In-frame | 4202 | NA | 0.38968 |
| BRCA | TCGA-B6-A0IA-01A | TCGA-B6-A0IA | CREBBP|NUBP1 | CREBBP | NUBP1 | 16 | 16 | -1 | 1 | 144 | 108 | 91 | 0.48 | 3819175 | 10846467 | tier1 | In-frame | 4209 | NA | 0.38685 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | CREBBP|ZNF500 | CREBBP | ZNF500 | 16 | 16 | -1 | -1 | 3 | 4 | 3 | 0.029 | 3929833 | 4803059 | tier4 | In-frame | 4214 | NA | 0.39298 |
| HNSC | TCGA-CR-7374-01A | TCGA-CR-7374 | CREBBP|ATG10 | CREBBP | ATG10 | 16 | 5 | -1 | 1 | 22 | 15 | 14 | 1.2 | 3900298 | 81354314 | tier1 | In-frame | 4200 | NA | 0.38826 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | CREBBP|SRRM2 | CREBBP | SRRM2 | 16 | 16 | -1 | 1 | 22 | 9 | 6 | 0.085 | 3929833 | 2806335 | tier1 | CDS-5UTR | 4212 | NA | 0.38735 |
| LUAD | TCGA-J2-A4AG-01A | TCGA-J2-A4AG | CREBBP|LUC7L | CREBBP | LUC7L | 16 | 16 | -1 | -1 | 2 | 5 | 5 | 0.23 | 3828012 | 243014 | tier3 | Out-of-frame | 4207 | NA | 0.38671 |
| LUSC | TCGA-60-2714-01A | TCGA-60-2714 | CREBBP|HCN1 | CREBBP | HCN1 | 16 | 5 | -1 | -1 | 57 | 20 | 18 | 0.17 | 3900298 | 45645710 | tier1 | Out-of-frame | 4204 | NA | 0.38892 |
| LUSC | TCGA-NC-A5HN-01A | TCGA-NC-A5HN | CREBBP|NAA60 | CREBBP | NAA60 | 16 | 16 | -1 | 1 | 3 | 2 | 2 | 0.084 | 3929833 | 3526222 | tier4 | CDS-5UTR | 4208 | NA | 0.38552 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | CREBBP|PRSS33 | CREBBP | PRSS33 | 16 | 16 | -1 | -1 | 104 | 65 | 51 | 0.053 | 3929833 | 2836122 | tier1 | In-frame | 4210 | NA | 0.38881 |
| SARC | TCGA-HB-A2OT-01A | TCGA-HB-A2OT | CREBBP|WRAP53 | CREBBP | WRAP53 | 16 | 17 | -1 | 1 | 16 | 4 | 3 | 0.036 | 3860604 | 7591966 | tier1 | CDS-5UTR | 4213 | NA | 0.38552 |
| SKCM | TCGA-ER-A42K-06A | TCGA-ER-A42K | CREBBP|C16orf59 | CREBBP | C16orf59 | 16 | 16 | -1 | 1 | 8 | 3 | 3 | 0.015 | 3788560 | 2514040 | tier1 | Out-of-frame | 4201 | NA | 0 |
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