Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
| Showing page 5 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | ADC|PHIP | ADC | PHIP | 1 | 6 | 1 | -1 | 6 | 4 | 3 | 1.6 | 33563780 | 79713575 | tier1 | In-frame | 461 | NA | 0.3607 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | SAMD8|KAT6B | SAMD8 | KAT6B | 10 | 10 | 1 | 1 | 8 | 6 | 6 | 0.014 | 76928416 | 76788247 | tier1 | Out-of-frame | 15298 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | C8orf76|ATAD2 | C8orf76 | ATAD2 | 8 | 8 | -1 | -1 | 8 | 4 | 4 | 0.076 | 124238740 | 124335306 | tier1 | In-frame | 2807 | NA | 0 |
| KIRC | TCGA-BP-4962-01A | TCGA-BP-4962 | C8orf76|ATAD2 | C8orf76 | ATAD2 | 8 | 8 | -1 | -1 | 2 | 4 | 4 | 0.076 | 124250038 | 124351686 | tier3 | In-frame | 2808 | NA | 0 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | ZHX1|ATAD2 | ZHX1 | ATAD2 | 8 | 8 | -1 | -1 | 11 | 7 | 6 | 0.007 | 124286362 | 124351686 | tier1 | 5UTR-CDS | 20305 | NA | 0 |
| LUSC | TCGA-63-A5MB-01A | TCGA-63-A5MB | WDYHV1|ATAD2 | WDYHV1 | ATAD2 | 8 | 8 | 1 | -1 | 2 | 1 | 1 | 1 | 124429096 | 124361684 | tier2 | 5UTR-CDS | 19823 | NA | 0 |
| PRAD | TCGA-HC-7233-01A | TCGA-HC-7233 | C8orf76|ATAD2 | C8orf76 | ATAD2 | 8 | 8 | -1 | -1 | 2 | 2 | 2 | 0.076 | 124253470 | 124361684 | tier4 | Out-of-frame | 2809 | non-validated | 0 |
| BLCA | TCGA-FD-A3SN-01A | TCGA-FD-A3SN | NISCH|PBRM1 | NISCH | PBRM1 | 3 | 3 | 1 | -1 | 4 | 2 | 2 | 1.4 | 52524849 | 52643971 | tier1 | In-frame | 11576 | NA | 0.37488 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | DUSP7|PBRM1 | DUSP7 | PBRM1 | 3 | 3 | -1 | -1 | 8 | 1 | 1 | 0.021 | 52087956 | 52588895 | tier3 | In-frame | 5186 | NA | 0.37005 |
| SKCM | TCGA-ER-A3ES-06A | TCGA-ER-A3ES | BAP1|PBRM1 | BAP1 | PBRM1 | 3 | 3 | -1 | -1 | 5 | 2 | 2 | 0.3 | 52438469 | 52663051 | tier1 | In-frame | 1924 | validated | 0.35748 |
| BLCA | TCGA-DK-AA76-01A | TCGA-DK-AA76 | MSI2|BRD7 | MSI2 | BRD7 | 17 | 16 | 1 | -1 | 4 | 3 | 1 | 0.17 | 55607085 | 50355949 | tier2 | Out-of-frame | 10711 | NA | 0.3664 |
| HNSC | TCGA-MZ-A7D7-01A | TCGA-MZ-A7D7 | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 6 | 2 | 2 | 0.16 | 136857197 | 136910543 | tier1 | In-frame | 19518 | NA | 0 |
| LIHC | TCGA-CC-A3MC-01A | TCGA-CC-A3MC | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 5 | 2 | 2 | 0.16 | 136671203 | 136898827 | tier1 | Out-of-frame | 19517 | NA | 0 |
| MESO | TCGA-TS-A7OU-01B | TCGA-TS-A7OU | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 2 | 4 | 4 | 0.16 | 136726496 | 136907073 | tier2 | Out-of-frame | 19520 | NA | 0 |
| PCPG | TCGA-QT-A5XM-01A | TCGA-QT-A5XM | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 5 | 2 | 1 | 0.16 | 136857197 | 136918712 | tier2 | CDS-5UTR | 19519 | NA | 0 |
| ESCA | TCGA-L5-A4OW-01A | TCGA-L5-A4OW | PGS1|BPTF | PGS1 | BPTF | 17 | 17 | 1 | 1 | 15 | 183 | 163 | 3.1 | 76400170 | 65916131 | tier1 | In-frame | 12672 | NA | 0.35903 |
| PAAD | TCGA-HZ-A4BH-01A | TCGA-HZ-A4BH | YPEL2|BPTF | YPEL2 | BPTF | 17 | 17 | 1 | 1 | 13 | 3 | 3 | 0.05 | 57430887 | 65850056 | tier1 | Out-of-frame | 20040 | NA | 0 |
| BRCA | TCGA-E2-A1BD-01A | TCGA-E2-A1BD | BGN|KIAA2026 | BGN | KIAA2026 | X | 9 | 1 | -1 | 2 | 17 | 1 | 7.3 | 152775004 | 5954095 | tier3 | 3UTR-CDS | 2079 | NA | 0.36432 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | AGAP1|SP140L | AGAP1 | SP140L | 2 | 2 | 1 | 1 | 2 | 6 | 6 | 0.23 | 236403493 | 231261472 | tier2 | Out-of-frame | 619 | NA | 0.3639 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | DYRK1A|BRWD1 | DYRK1A | BRWD1 | 21 | 21 | 1 | -1 | 4 | 6 | 6 | 0.24 | 38792686 | 40574471 | tier1 | Out-of-frame | 5227 | NA | 0.38298 |
|
Showing page 5 |
first page | previous page | next page | last page |
Copyright © 2015 University of Pennsylvania. All Rights Reserved.