TCEA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the HAMPs in each cancer type

Show entries each page Jump to page Total Page: 21 Total entries: 400
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LGG	TCGA-HT-7483-01A	TCGA-HT-7483	C9orf102\|GTF3C4	C9orf102	GTF3C4	9	9	1	1	10	6	6	0.42	98703831	135553364	tier1	Out-of-frame	2813	NA	0
BRCA	TCGA-E9-A1N9-01A	TCGA-E9-A1N9	OCEL1\|SMARCA4	OCEL1	SMARCA4	19	19	1	1	2	2	1	0.005	17338008	11094797	tier2	CDS-5UTR	11995	NA	0.3795
BRCA	TCGA-BH-A1FE-01A	TCGA-BH-A1FE	PDSS2\|SMARCA4	PDSS2	SMARCA4	6	19	-1	1	44	5	4	0.73	107780194	11094797	tier1	CDS-5UTR	12573	NA	0.37864
LUAD	TCGA-49-AAR4-01A	TCGA-49-AAR4	LDLR\|SMARCA4	LDLR	SMARCA4	19	19	1	1	25	7	7	0.31	11234020	11172460	tier1	Out-of-frame	9270	NA	0.38729
SARC	TCGA-K1-A3PO-01A	TCGA-K1-A3PO	EEF2\|SMARCA4	EEF2	SMARCA4	19	19	-1	1	2401	2401	2216	0.19	3982805	11151983	tier1	In-frame	5316	NA	0.38062
SARC	TCGA-DX-A48N-01A	TCGA-DX-A48N	OSTF1\|SMARCA4	OSTF1	SMARCA4	9	19	1	1	124	76	67	0.022	77703642	11141406	tier1	In-frame	12107	NA	0.38244
SKCM	TCGA-ER-A19H-06A	TCGA-ER-A19H	SLC25A42\|SMARCA4	SLC25A42	SMARCA4	19	19	1	1	2	6	4	0.65	19174924	11123625	tier2	5UTR-CDS	16115	NA	0
LUSC	TCGA-52-7809-01A	TCGA-52-7809	METAP1D\|HAT1	METAP1D	HAT1	2	2	1	1	3	3	3	0.2	172864916	172841096	tier1	In-frame	10261	NA	0.33452
STAD	TCGA-BR-7901-01A	TCGA-BR-7901	ITGA6\|HAT1	ITGA6	HAT1	2	2	1	1	2	7	7	4.2	173292698	172809399	tier4	In-frame	8383	NA	0.36894
PRAD	TCGA-YL-A9WY-01A	TCGA-YL-A9WY	ZMAT4\|ELP3	ZMAT4	ELP3	8	8	-1	1	2	2	2	1.1	40532223	28047166	tier2	In-frame	20314	NA	0
SKCM	TCGA-D3-A1Q1-06A	TCGA-D3-A1Q1	RIMKLB\|ELP3	RIMKLB	ELP3	12	8	1	1	6	16	14	0.21	8866637	27954736	tier1	In-frame	14689	non-validated	0
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	HMBOX1\|ELP3	HMBOX1	ELP3	8	8	1	1	5	10	10	0.13	28748195	27995215	tier1	5UTR-CDS	7845	NA	0.35655
BRCA	TCGA-D8-A1XT-01A	TCGA-D8-A1XT	TRIP12\|SP110	TRIP12	SP110	2	2	-1	-1	17	9	9	0.56	230701564	231037675	tier1	Out-of-frame	18692	NA	0
LUAD	TCGA-78-7536-01A	TCGA-78-7536	SLC16A14\|SP110	SLC16A14	SP110	2	2	-1	-1	535	462	399	4.6	230914477	231076268	tier1	In-frame	16028	NA	0
BRCA	TCGA-AR-A250-01A	TCGA-AR-A250	BCAS3\|KAT7	BCAS3	KAT7	17	17	1	1	6	5	4	0.042	59161925	47893165	tier1	Out-of-frame	1983	NA	0.33323
BRCA	TCGA-A7-A26G-01A	TCGA-A7-A26G	MTF2\|BRDT	MTF2	BRDT	1	1	1	1	3	12	12	0.54	93545088	92469971	tier1	Out-of-frame	10787	non-validated	0.36615
BRCA	TCGA-AC-A2FM-01A	TCGA-AC-A2FM	EPS15L1\|BRD4	EPS15L1	BRD4	19	19	-1	-1	11	3	2	0.16	16545176	15383944	tier1	CDS-5UTR	5701	NA	0.37172
CESC	TCGA-HM-A6W2-01A	TCGA-HM-A6W2	NOTCH3\|BRD4	NOTCH3	BRD4	19	19	-1	-1	17	9	8	0.01	15308311	15360101	tier1	Out-of-frame	11671	NA	0.37741
UCEC	TCGA-B5-A0JN-01A	TCGA-B5-A0JN	NOTCH3\|BRD4	NOTCH3	BRD4	19	19	-1	-1	3	3	3	0.01	15299800	15360101	tier1	In-frame	11670	non-validated	0.37741
LGG	TCGA-DU-8166-01A	TCGA-DU-8166	SPON1\|SIRT3	SPON1	SIRT3	11	11	1	-1	27	5	5	1.7	14063201	233534	tier1	In-frame	16744	NA	0

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