TCEA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the HAMPs in each cancer type

Show entries each page Jump to page Total Page: 21 Total entries: 400
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	C22orf34\|HDAC10	C22orf34	HDAC10	22	22	-1	-1	9	8	7	0.72	50020491	50689334	tier1	Out-of-frame	2671	NA	0
BRCA	TCGA-A2-A0CT-01A	TCGA-A2-A0CT	SYCP2\|ZMYND8	SYCP2	ZMYND8	20	20	-1	-1	7	9	2	3.7	58467045	45927616	tier1	In-frame	17228	NA	0
PCPG	TCGA-WB-A818-01A	TCGA-WB-A818	CC2D1A\|ZMYND8	CC2D1A	ZMYND8	19	20	1	-1	6	6	6	0.7	14030015	45938948	tier2	In-frame	3096	NA	0.36701
ESCA	TCGA-V5-A7RE-01A	TCGA-V5-A7RE	MMD\|HDAC5	MMD	HDAC5	17	17	-1	-1	19	58	55	0.003	53499031	42165966	tier1	Out-of-frame	10541	NA	0.37248
PRAD	TCGA-YL-A8HO-01A	TCGA-YL-A8HO	AFF3\|HDAC5	AFF3	HDAC5	2	17	-1	-1	2	3	3	0.01	100623094	42171202	tier4	Out-of-frame	592	NA	0.37414
PRAD	TCGA-J4-A67T-01A	TCGA-J4-A67T	CPD\|HDAC5	CPD	HDAC5	17	17	1	-1	87	131	114	0.5	28712254	42171202	tier2	In-frame	4108	NA	0.37379
UCEC	TCGA-EY-A4KR-01A	TCGA-EY-A4KR	MACF1\|HDAC5	MACF1	HDAC5	1	17	1	-1	2	3	2	0.11	39723700	42195072	tier2	CDS-5UTR	9730	NA	0.38177
LUSC	TCGA-60-2721-01A	TCGA-60-2721	BSDC1\|HDAC1	BSDC1	HDAC1	1	1	-1	1	86	60	57	1.2	32834048	32797075	tier1	Out-of-frame	2242	NA	0.37238
UCS	TCGA-N9-A4Q1-01A	TCGA-N9-A4Q1	VTI1A\|HDAC1	VTI1A	HDAC1	10	1	1	1	10	9	9	3.8	114298089	32790080	tier1	In-frame	19694	NA	0
LUAD	TCGA-91-6836-01A	TCGA-91-6836	CLK2\|ASH1L	CLK2	ASH1L	1	1	-1	-1	13	9	7	0.26	155236520	155313533	tier1	In-frame	3811	NA	0.37517
LUAD	TCGA-97-A4M3-01A	TCGA-97-A4M3	GATAD2B\|ASH1L	GATAD2B	ASH1L	1	1	-1	-1	4	1	1	0.26	153895209	155349907	tier2	5UTR-CDS	6978	NA	0.37119
LUAD	TCGA-55-7903-01A	TCGA-55-7903	SHC1\|ASH1L	SHC1	ASH1L	1	1	-1	-1	27	9	6	1.5	154946724	155309159	tier1	5UTR-CDS	15877	NA	0
LUSC	TCGA-33-4587-01A	TCGA-33-4587	CDKAL1\|ASH1L	CDKAL1	ASH1L	6	1	1	-1	14	19	14	0.4	20846409	155349907	tier1	In-frame	3445	NA	0.36064
PRAD	TCGA-EJ-5518-01A	TCGA-EJ-5518	NME7\|ASH1L	NME7	ASH1L	1	1	-1	-1	4	3	3	0.057	169292355	155491409	tier1	CDS-5UTR	11614	NA	0.37008
LAML	TCGA-AB-2893-03A	TCGA-AB-2893	MLLT4\|MLL	MLLT4	MLL	6	11	1	1	11	2	2	0.38	168227917	118352430	tier1	Out-of-frame	10525	NA	0.39579
READ	TCGA-F5-6464-01A	TCGA-F5-6464	BRAF\|TRIM24	BRAF	TRIM24	7	7	-1	1	7	1	1	0.74	140624366	138258252	tier3	In-frame	2190	NA	0.39399
BRCA	TCGA-BH-A18T-01A	TCGA-BH-A18T	WDSUB1\|BAZ2B	WDSUB1	BAZ2B	2	2	-1	-1	7	6	6	0.013	160136272	160189197	tier1	Out-of-frame	19817	NA	0
LUSC	TCGA-NC-A5HJ-01A	TCGA-NC-A5HJ	WDSUB1\|BAZ2B	WDSUB1	BAZ2B	2	2	-1	-1	2	2	2	0.013	160104883	160269056	tier3	Out-of-frame	19818	NA	0
BLCA	TCGA-C4-A0F7-01A	TCGA-C4-A0F7	TCF12\|NCOA3	TCF12	NCOA3	15	20	1	1	19	20	19	0.5	57213296	46211927	tier1	CDS-5UTR	17583	non-validated	0
BRCA	TCGA-E2-A15F-01A	TCGA-E2-A15F	PTPRT\|NCOA3	PTPRT	NCOA3	20	20	-1	1	86	100	87	0.002	40944363	46211927	tier1	CDS-5UTR	13921	NA	0

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