Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
| Showing page 20 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | BRWD1|ABCA10 | BRWD1 | ABCA10 | 21 | 17 | -1 | -1 | 2 | 3 | 2 | 0.24 | 40619627 | 67184020 | tier2 | Out-of-frame | 2231 | NA | 0.36755 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | BRWD1|ABCG1 | BRWD1 | ABCG1 | 21 | 21 | -1 | 1 | 4 | 2 | 2 | 0.46 | 40665737 | 43645781 | tier1 | In-frame | 2232 | NA | 0.3695 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | BRWD1|DYRK1A | BRWD1 | DYRK1A | 21 | 21 | -1 | 1 | 7 | 16 | 13 | 0.069 | 40581921 | 38844986 | tier1 | Out-of-frame | 2233 | NA | 0.38298 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | BRWD1|LCA5L | BRWD1 | LCA5L | 21 | 21 | -1 | -1 | 4 | 9 | 7 | 0.34 | 40585407 | 40801137 | tier1 | CDS-5UTR | 2235 | NA | 0.36819 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | BRWD1|WDR4 | BRWD1 | WDR4 | 21 | 21 | -1 | -1 | 2 | 5 | 5 | 0.98 | 40608521 | 44283706 | tier3 | Out-of-frame | 2238 | NA | 0.36732 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | BRWD1|HUNK | BRWD1 | HUNK | 21 | 21 | -1 | 1 | 2 | 2 | 2 | 0.08 | 40641825 | 33340562 | tier3 | Out-of-frame | 2234 | non-validated | 0.38035 |
| LUAD | TCGA-55-6987-01A | TCGA-55-6987 | BRWD1|SMC1A | BRWD1 | SMC1A | 21 | X | -1 | -1 | 5 | 3 | 2 | 0.11 | 40568424 | 53442118 | tier1 | In-frame | 2237 | NA | 0.37726 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | BRWD1|WRB | BRWD1 | WRB | 21 | 21 | -1 | 1 | 2 | 2 | 2 | 0.061 | 40572145 | 40762624 | tier3 | Out-of-frame | 2239 | NA | 0.36697 |
| PRAD | TCGA-HC-7081-01A | TCGA-HC-7081 | BRWD1|RAPGEF4 | BRWD1 | RAPGEF4 | 21 | 2 | -1 | 1 | 44 | 40 | 35 | 2 | 40670358 | 173913328 | tier1 | Out-of-frame | 2236 | NA | 0.37324 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | SIRT7|CCDC57 | SIRT7 | CCDC57 | 17 | 17 | -1 | -1 | 4 | 6 | 4 | 4.4 | 79872170 | 80059742 | tier1 | Out-of-frame | 15963 | non-validated | 0 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | HDAC2|TRDN | HDAC2 | TRDN | 6 | 6 | -1 | -1 | 19 | 27 | 24 | 0.039 | 114292021 | 123545276 | tier1 | In-frame | 7618 | NA | 0.3699 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | TRIM33|COL24A1 | TRIM33 | COL24A1 | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.58 | 115005726 | 86334309 | tier1 | Out-of-frame | 18631 | NA | 0 |
| LUAD | TCGA-55-6543-01A | TCGA-55-6543 | TRIM33|RET | TRIM33 | RET | 1 | 10 | -1 | 1 | 21 | 21 | 20 | 1.7 | 114964058 | 43612032 | tier1 | In-frame | 18635 | NA | 0 |
| LUSC | TCGA-52-7809-01A | TCGA-52-7809 | TRIM33|CSMD2 | TRIM33 | CSMD2 | 1 | 1 | -1 | -1 | 14 | 4 | 3 | 1.2 | 114948032 | 34128692 | tier1 | In-frame | 18634 | NA | 0 |
| PCPG | TCGA-QR-A70X-01A | TCGA-QR-A70X | TRIM33|SHC1 | TRIM33 | SHC1 | 1 | 1 | -1 | -1 | 5 | 6 | 6 | 0.3 | 114963002 | 154942675 | tier1 | CDS-5UTR | 18636 | NA | 0 |
| PRAD | TCGA-CH-5750-01A | TCGA-CH-5750 | TRIM33|CSDE1 | TRIM33 | CSDE1 | 1 | 1 | -1 | -1 | 5 | 9 | 9 | 0.002 | 114945382 | 115282511 | tier1 | In-frame | 18632 | non-validated | 0 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | TRIM33|CSDE1 | TRIM33 | CSDE1 | 1 | 1 | -1 | -1 | 12 | 12 | 12 | 0.002 | 114945382 | 115282511 | tier1 | In-frame | 18633 | NA | 0 |
| READ | TCGA-AG-4021-01A | TCGA-AG-4021 | TRIM33|BCAR3 | TRIM33 | BCAR3 | 1 | 1 | -1 | -1 | 11 | 16 | 15 | 0.96 | 115053172 | 94171698 | tier1 | CDS-5UTR | 18630 | NA | 0 |
| LUAD | TCGA-L9-A444-01A | TCGA-L9-A444 | BAZ1A|NKX2-1 | BAZ1A | NKX2-1 | 14 | 14 | -1 | -1 | 4 | 5 | 4 | 0.045 | 35331250 | 36988575 | tier2 | In-frame | 1931 | NA | 0.37703 |
| LUSC | TCGA-63-6202-01A | TCGA-63-6202 | BAZ1A|RNF115 | BAZ1A | RNF115 | 14 | 1 | -1 | 1 | 25 | 9 | 8 | 0.76 | 35343698 | 145646115 | tier1 | Out-of-frame | 1932 | NA | 0.37258 |
|
Showing page 20 |
first page | previous page | next page | last page |
Copyright © 2015 University of Pennsylvania. All Rights Reserved.