Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | ATAD2|PODXL | ATAD2 | PODXL | 8 | 7 | -1 | -1 | 26 | 18 | 16 | 0.34 | 124351551 | 131196192 | tier1 | In-frame | 1579 | NA | 0.36348 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | ATAD2|RAD51B | ATAD2 | RAD51B | 8 | 14 | -1 | 1 | 6 | 1 | 1 | 0.042 | 124381298 | 68758601 | tier2 | Out-of-frame | 1580 | NA | 0.34436 |
| HNSC | TCGA-CV-6935-01A | TCGA-CV-6935 | ATAD2|ERBB4 | ATAD2 | ERBB4 | 8 | 2 | -1 | -1 | 20 | 10 | 10 | 0.016 | 124381298 | 212530202 | tier1 | Out-of-frame | 1575 | NA | 0.38594 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | ATAD2|LRP12 | ATAD2 | LRP12 | 8 | 8 | -1 | -1 | 7 | 17 | 16 | 0.005 | 124408427 | 105521302 | tier1 | Out-of-frame | 1578 | NA | 0.3681 |
| LUAD | TCGA-05-4422-01A | TCGA-05-4422 | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 17 | 29 | 1 | 1 | 124392769 | 124440164 | tier2 | In-frame | 1581 | validated | 0.36133 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 4 | 1 | 1 | 1 | 124384877 | 124448693 | tier2 | Out-of-frame | 1583 | NA | 0.36133 |
| UCEC | TCGA-DF-A2KR-01A | TCGA-DF-A2KR | ATAD2|KHDRBS3 | ATAD2 | KHDRBS3 | 8 | 8 | -1 | 1 | 4 | 2 | 2 | 0.032 | 124346118 | 136533480 | tier1 | In-frame | 1577 | NA | 0.36366 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 7 | 7 | 3 | 1 | 124408427 | 124440164 | tier1 | Out-of-frame | 1582 | NA | 0.36133 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | HDAC11|CDH18 | HDAC11 | CDH18 | 3 | 5 | 1 | -1 | 24 | 19 | 18 | 1.3 | 13525064 | 19981287 | tier2 | CDS-5UTR | 7617 | non-validated | 0.36938 |
| BRCA | TCGA-E2-A1L7-01A | TCGA-E2-A1L7 | PBRM1|CACNA2D3 | PBRM1 | CACNA2D3 | 3 | 3 | -1 | 1 | 2 | 7 | 6 | 0.99 | 52637537 | 54420742 | tier2 | Out-of-frame | 12332 | NA | 0.35421 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | PBRM1|TKT | PBRM1 | TKT | 3 | 3 | -1 | -1 | 5 | 9 | 7 | 0.23 | 52692215 | 53276258 | tier1 | Out-of-frame | 12338 | non-validated | 0.35391 |
| HNSC | TCGA-QK-A6VC-01A | TCGA-QK-A6VC | PBRM1|GLT8D1 | PBRM1 | GLT8D1 | 3 | 3 | -1 | -1 | 10 | 17 | 14 | 0.62 | 52712516 | 52734512 | tier1 | CDS-5UTR | 12334 | NA | 0.3519 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | PBRM1|KYNU | PBRM1 | KYNU | 3 | 2 | -1 | 1 | 67 | 48 | 42 | 1.7 | 52692215 | 143742653 | tier2 | In-frame | 12336 | NA | 0.35749 |
| LUAD | TCGA-99-8032-01A | TCGA-99-8032 | PBRM1|IGSF11 | PBRM1 | IGSF11 | 3 | 3 | -1 | -1 | 7 | 4 | 3 | 0.078 | 52712516 | 118647563 | tier1 | Out-of-frame | 12335 | NA | 0.3616 |
| LUAD | TCGA-55-8085-01A | TCGA-55-8085 | PBRM1|TMEM110-MUSTN1 | PBRM1 | TMEM110-MUSTN1 | 3 | 3 | -1 | -1 | 12 | 4 | 4 | 4.6 | 52584437 | 52889460 | tier1 | In-frame | 12339 | NA | 0.35034 |
| MESO | TCGA-MQ-A4LM-01A | TCGA-MQ-A4LM | PBRM1|FBXW12 | PBRM1 | FBXW12 | 3 | 3 | -1 | 1 | 3 | 4 | 4 | 0.44 | 52595783 | 48416844 | tier1 | In-frame | 12333 | NA | 0.35578 |
| SKCM | TCGA-EB-A5SE-01A | TCGA-EB-A5SE | PBRM1|NEK4 | PBRM1 | NEK4 | 3 | 3 | -1 | -1 | 14 | 8 | 7 | 1 | 52637537 | 52773650 | tier1 | Out-of-frame | 12337 | NA | 0.36308 |
| CESC | TCGA-ZJ-AAX4-01A | TCGA-ZJ-AAX4 | BRWD3|LRCH2 | BRWD3 | LRCH2 | X | X | -1 | -1 | 5 | 3 | 3 | 0.16 | 80064038 | 114391230 | tier1 | Out-of-frame | 2241 | NA | 0.35706 |
| HNSC | TCGA-QK-A8ZB-01A | TCGA-QK-A8ZB | BRWD3|FAM155A | BRWD3 | FAM155A | X | 13 | -1 | -1 | 27 | 19 | 18 | 0.24 | 80047353 | 107823134 | tier1 | In-frame | 2240 | NA | 0.34732 |
| BLCA | TCGA-ZF-A9RE-01A | TCGA-ZF-A9RE | BPTF|TTYH2 | BPTF | TTYH2 | 17 | 17 | 1 | 1 | 3 | 6 | 6 | 1.5 | 65822453 | 72227027 | tier1 | Out-of-frame | 2174 | NA | 0.35925 |
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