TCEA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the HAMPs in each cancer type

Show entries each page Jump to page Total Page: 21 Total entries: 400
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LAML	TCGA-AB-2956-03A	TCGA-AB-2956	MLL\|MLLT3	MLL	MLLT3	11	9	1	-1	9	10	9	1.2	118353210	20365742	tier1	In-frame	10455	NA	0.38125
LAML	TCGA-AB-2883-03A	TCGA-AB-2883	MLL\|MLLT4	MLL	MLLT4	11	6	1	1	13	16	16	0.38	118355029	168265231	tier1	In-frame	10456	NA	0.39579
LAML	TCGA-AB-2893-03A	TCGA-AB-2893	MLL\|MLLT4	MLL	MLLT4	11	6	1	1	10	11	11	0.38	118353210	168265231	tier4	In-frame	10457	NA	0.39579
LGG	TCGA-DU-A7T6-01A	TCGA-DU-A7T6	MLL\|IGHMBP2	MLL	IGHMBP2	11	11	1	1	4	6	5	8.2	118382740	68685204	tier1	Out-of-frame	10450	NA	0.38049
LUAD	TCGA-97-8174-01A	TCGA-97-8174	MLL\|FYN	MLL	FYN	11	6	1	-1	14	19	18	0.004	118382740	112025305	tier1	Out-of-frame	10449	NA	0.39684
SKCM	TCGA-EB-A4XL-01A	TCGA-EB-A4XL	MLL\|ZDHHC7	MLL	ZDHHC7	11	16	1	-1	9	5	4	2	118307659	85010831	tier1	Out-of-frame	10459	NA	0.37997
BRCA	TCGA-LL-A740-01A	TCGA-LL-A740	ATAD2B\|ITSN2	ATAD2B	ITSN2	2	2	-1	-1	2	1	1	0.15	24021008	24426652	tier2	Out-of-frame	1585	NA	0.37292
LGG	TCGA-DU-6397-01A	TCGA-DU-6397	ATAD2B\|AC008073.5	ATAD2B	AC008073.5	2	2	-1	-1	3	6	5	0.76	24092533	24290721	tier1	Out-of-frame	1584	non-validated	0.34962
BRCA	TCGA-C8-A1HM-01A	TCGA-C8-A1HM	TRIM24\|SVOPL	TRIM24	SVOPL	7	7	1	-1	113	67	62	6	138258387	138281275	tier1	Out-of-frame	18619	NA	0
BRCA	TCGA-A8-A08R-01A	TCGA-A8-A08R	TRIM24\|ULK4	TRIM24	ULK4	7	3	1	-1	5	2	2	0.4	138189153	41497086	tier1	In-frame	18620	NA	0
LIHC	TCGA-DD-AACL-01A	TCGA-DD-AACL	TRIM24\|BRAF	TRIM24	BRAF	7	7	1	-1	9	2	2	0.74	138239609	140550012	tier1	In-frame	18616	NA	0
LUAD	TCGA-55-8091-01A	TCGA-55-8091	TRIM24\|NTRK2	TRIM24	NTRK2	7	9	1	1	13	11	9	0.71	138258387	87482158	tier1	In-frame	18618	NA	0
READ	TCGA-F5-6464-01A	TCGA-F5-6464	TRIM24\|BRAF	TRIM24	BRAF	7	7	1	-1	7	4	4	0.74	138255748	140550012	tier1	In-frame	18617	NA	0
CESC	TCGA-VS-A8QH-01A	TCGA-VS-A8QH	BAZ2B\|SLC38A11	BAZ2B	SLC38A11	2	2	-1	-1	2	2	1	0.32	160241666	165802237	tier4	Out-of-frame	1948	NA	0.36068
CHOL	TCGA-W5-AA30-01A	TCGA-W5-AA30	BAZ2B\|PLA2R1	BAZ2B	PLA2R1	2	2	-1	-1	4	1	1	0.21	160412334	160885474	tier3	5UTR-CDS	1947	NA	0.36728
LUSC	TCGA-85-A4JB-01A	TCGA-85-A4JB	BAZ2B\|CYBRD1	BAZ2B	CYBRD1	2	2	-1	1	8	3	3	0.11	160472753	172398095	tier1	5UTR-CDS	1945	NA	0.36173
STAD	TCGA-BR-A4CR-01A	TCGA-BR-A4CR	BAZ2B\|STK39	BAZ2B	STK39	2	2	-1	-1	2	9	6	0.093	160412334	168931741	tier4	5UTR-CDS	1949	NA	0.37555
UCEC	TCGA-A5-A7WK-01A	TCGA-A5-A7WK	BAZ2B\|ITGB6	BAZ2B	ITGB6	2	2	-1	-1	3	3	3	1.4	160229556	161030650	tier1	Out-of-frame	1946	NA	0.37417
BLCA	TCGA-DK-A3IS-01A	TCGA-DK-A3IS	NCOA3\|DUSP15	NCOA3	DUSP15	20	20	1	-1	5	2	2	1.7	46130763	30454956	tier1	5UTR-5UTR	11194	NA	0.37472
CESC	TCGA-LP-A5U3-01A	TCGA-LP-A5U3	NCOA3\|ARHGAP26	NCOA3	ARHGAP26	20	5	1	1	45	31	31	0.75	46256767	142601923	tier1	In-frame	11193	NA	0.38438

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