Recurrent Alteration

 

Given that they occur statistically more frequently than the background, recurrent genomic alterations are considered to be under strong selective pressure and more likely play causal roles during tumorigenesis (putative therapeutic targets). To estimate the recurrent alterations of HAMPs at a pan-cancer level, we calculated an overall recurrent score via an unweighted numeric sum of the numbers of recurrent events for a given HAMP across all cancer types.

 

Summary of the overall recurrent scores of the HAMPs across common cancer types


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 HGNC Symbol  Ensembl Gene ID  No. of Cancer  Overall Recurrent Score  Contibution_Mut  Contibution_SCNA_Amp  Contibution_SCNA_Del 
HDAC10  ENSG00000100429    6    6    0    0    6  
HDAC6  ENSG00000094631    0    0    0    0    0  
HDAC7  ENSG00000061273    1    1    0    1    0  
HDAC4  ENSG00000068024    8    8    0    0    8  
HDAC5  ENSG00000108840    3    3    0    0    3  
HDAC9  ENSG00000048052    2    2    1    1    0  
SIRT6  ENSG00000077463    1    1    0    0    1  
SIRT3  ENSG00000142082    6    6    0    0    6  
SIRT1  ENSG00000096717    1    1    1    0    0  
SIRT2  ENSG00000068903    0    0    0    0    0  
SIRT7  ENSG00000187531    2    2    0    2    0  
SIRT4  ENSG00000089163    1    1    0    0    1  
SIRT5  ENSG00000124523    4    4    0    3    1  

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